A Comprehensive Analysis of Transcript-Supported De Novo Genes in Saccharomyces sensu stricto Yeasts
出版年份 2017 全文链接
标题
A Comprehensive Analysis of Transcript-Supported De Novo Genes in Saccharomyces sensu stricto Yeasts
作者
关键词
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出版物
MOLECULAR BIOLOGY AND EVOLUTION
Volume 34, Issue 11, Pages 2823-2838
出版商
Oxford University Press (OUP)
发表日期
2017-07-22
DOI
10.1093/molbev/msx210
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Stepwise Evolution of a Buried Inhibitor Peptide over 45 My
- (2017) Achala S. Jayasena et al. MOLECULAR BIOLOGY AND EVOLUTION
- Contrasting evolutionary genome dynamics between domesticated and wild yeasts
- (2017) Jia-Xing Yue et al. NATURE GENETICS
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting
- (2016) Daniele Guerzoni et al. Genome Biology and Evolution
- On the Origin of De Novo Genes inArabidopsis thalianaPopulations
- (2016) Zi-Wen Li et al. Genome Biology and Evolution
- Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution
- (2016) Bryan A. Moyers et al. MOLECULAR BIOLOGY AND EVOLUTION
- Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'
- (2015) E. Bornberg-Bauer et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting
- (2015) Lea Fellner et al. BMC EVOLUTIONARY BIOLOGY
- The 100-genomes strains, anS. cerevisiaeresource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
- (2015) Pooja K. Strope et al. GENOME RESEARCH
- A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
- (2015) Alexander P. Fields et al. MOLECULAR CELL
- Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
- (2015) Marina Marcet-Houben et al. PLOS BIOLOGY
- Origins of De Novo Genes in Human and Chimpanzee
- (2015) Jorge Ruiz-Orera et al. PLoS Genetics
- Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
- (2015) Zhe Ji et al. eLife
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Expression Profile and Gene Age Jointly Shaped the Genome-Wide Distribution of Premature Termination Codons in a Drosophila melanogaster Population
- (2014) Haiwang Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
- (2014) L. Zhao et al. SCIENCE
- Coming of age: orphan genes in plants
- (2014) Zebulun W. Arendsee et al. TRENDS IN PLANT SCIENCE
- The life cycle of Drosophila orphan genes
- (2014) Nicola Palmieri et al. eLife
- Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
- (2013) Rafik Neme et al. BMC GENOMICS
- Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes
- (2013) Lothar Wissler et al. Genome Biology and Evolution
- Extensive transcriptional heterogeneity revealed by isoform profiling
- (2013) Vicent Pelechano et al. NATURE
- Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the “Gene Nursery” of Deltaretroviruses
- (2013) Angelo Pavesi et al. PLoS Computational Biology
- De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
- (2013) Josephine A. Reinhardt et al. PLoS Genetics
- Evolution of cis-regulatory elements in yeast de novo and duplicated new genes
- (2012) Zing Tsung-Yeh Tsai et al. BMC GENOMICS
- Evolution of Viral Proteins Originated De Novo by Overprinting
- (2012) Niv Sabath et al. MOLECULAR BIOLOGY AND EVOLUTION
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- De Novo Origin of Protein-Coding Genes in Murine Rodents
- (2012) Daniel N. Murphy et al. PLoS One
- Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
- (2012) Chen Xie et al. PLoS Genetics
- Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments
- (2011) Seán S ÓhÉigeartaigh et al. BMC GENOMICS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling
- (2011) G. A. Brar et al. SCIENCE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- De Novo Origin of Human Protein-Coding Genes
- (2011) Dong-Dong Wu et al. PLoS Genetics
- A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand
- (2010) Dan Li et al. CELL RESEARCH
- New Genes in Drosophila Quickly Become Essential
- (2010) S. Chen et al. SCIENCE
- Evolutionary Roles of Upstream Open Reading Frames in Mediating Gene Regulation in Fungi
- (2009) Heather M. Hood et al. Annual Review of Microbiology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Emergence of a New Gene from an Intergenic Region
- (2009) Tobias J.A.J. Heinen et al. CURRENT BIOLOGY
- Recent de novo origin of human protein-coding genes
- (2009) D. G. Knowles et al. GENOME RESEARCH
- Identifying and Quantifying Orphan Protein Sequences in Fungi
- (2009) Diana Ekman et al. JOURNAL OF MOLECULAR BIOLOGY
- Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation
- (2009) C. Rancurel et al. JOURNAL OF VIROLOGY
- A Rice Gene of De Novo Origin Negatively Regulates Pathogen-Induced Defense Response
- (2009) Wenfei Xiao et al. PLoS One
- Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals
- (2009) Shinichi Sunagawa et al. PLoS One
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- More than just orphans: are taxonomically-restricted genes important in evolution?
- (2009) Konstantin Khalturin et al. TRENDS IN GENETICS
- Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome
- (2009) Jonathan L. Gordon et al. PLoS Genetics
- De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae
- (2008) J. Cai et al. GENETICS
- On the origin of new genes in Drosophila
- (2008) Q. Zhou et al. GENOME RESEARCH
- Revisiting the Saccharomyces cerevisiae predicted ORFeome
- (2008) Q.-R. Li et al. GENOME RESEARCH
- Origin of Primate Orphan Genes: A Comparative Genomics Approach
- (2008) M. Toll-Riera et al. MOLECULAR BIOLOGY AND EVOLUTION
- Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites
- (2008) R. Egea et al. NUCLEIC ACIDS RESEARCH
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