Generative models for network neuroscience: prospects and promise

A statistical model for brain networks inferred from large-scale electrophysiological signals

(2017) Catalina Obando et al.   Journal of the Royal Society Interface

The complete connectome of a learning and memory centre in an insect brain

(2017) Katharina Eichler et al.   NATURE

Dynamic models of large-scale brain activity

(2017) Michael Breakspear   NATURE NEUROSCIENCE

Network neuroscience

(2017) Danielle S Bassett et al.   NATURE NEUROSCIENCE

The energy landscape underpinning module dynamics in the human brain connectome

(2017) Arian Ashourvan et al.   NEUROIMAGE

Multifactorial causal model of brain (dis)organization and therapeutic intervention: Application to Alzheimer’s disease

(2017) Yasser Iturria-Medina et al.   NEUROIMAGE

Multi-scale brain networks

(2017) Richard F. Betzel et al.   NEUROIMAGE

Precision Functional Mapping of Individual Human Brains

(2017) Evan M. Gordon et al.   NEURON

Parallel Interdigitated Distributed Networks within the Individual Estimated by Intrinsic Functional Connectivity

(2017) Rodrigo M. Braga et al.   NEURON

Energy landscape analysis of neuroimaging data

(2017) Takahiro Ezaki et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Collective Phenomena Emerging from the Interactions between Dynamical Processes in Multiplex Networks

(2017) Vincenzo Nicosia et al.   PHYSICAL REVIEW LETTERS

Brain and Social Networks: Fundamental Building Blocks of Human Experience

(2017) Emily B. Falk et al.   TRENDS IN COGNITIVE SCIENCES

A Network Neuroscience of Human Learning: Potential to Inform Quantitative Theories of Brain and Behavior

(2017) Danielle S. Bassett et al.   TRENDS IN COGNITIVE SCIENCES

Human Connectomics across the Life Span

(2017) Xi-Nian Zuo et al.   TRENDS IN COGNITIVE SCIENCES

Mechanisms of Connectome Development

(2017) Marcus Kaiser   TRENDS IN COGNITIVE SCIENCES

Developmental increases in white matter network controllability support a growing diversity of brain dynamics

(2017) Evelyn Tang et al.   Nature Communications

The missing link: Predicting connectomes from noisy and partially observed tract tracing data

(2017) Max Hinne et al.   PLoS Computational Biology

Nonlinear growth: an origin of hub organization in complex networks

(2017) Roman Bauer et al.   Royal Society Open Science

Autaptic Connections Shift Network Excitability and Bursting

(2017) Laura Wiles et al.   Scientific Reports

A Predictive Structural Model of the Primate Connectome

(2017) Sarah F. Beul et al.   Scientific Reports

Statistical Modeling of the Default Mode Brain Network Reveals a Segregated Highway Structure

(2017) Paul E. Stillman et al.   Scientific Reports

Modular Brain Networks

(2016) Olaf Sporns et al.   Annual Review of Psychology

Principles of ipsilateral and contralateral cortico-cortical connectivity in the mouse

(2016) Alexandros Goulas et al.   Brain Structure & Function

When brain rhythms aren't ‘rhythmic’: implication for their mechanisms and meaning

(2016) Stephanie R Jones   CURRENT OPINION IN NEUROBIOLOGY

Two’s company, three (or more) is a simplex

(2016) Chad Giusti et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Natural speech reveals the semantic maps that tile human cerebral cortex

(2016) Alexander G. Huth et al.   NATURE

Generative models of the human connectome

(2016) Richard F. Betzel et al.   NEUROIMAGE

Small-World Brain Networks Revisited

(2016) Danielle S. Bassett et al.   NEUROSCIENTIST

Global Optimization, Local Adaptation, and the Role of Growth in Distribution Networks

(2016) Henrik Ronellenfitsch et al.   PHYSICAL REVIEW LETTERS

Organizing conceptual knowledge in humans with a gridlike code

(2016) A. O. Constantinescu et al.   SCIENCE

Functional Connectivity of the Human Brain in Utero

(2016) Marion I. van den Heuvel et al.   TRENDS IN COGNITIVE SCIENCES

Comparative Connectomics

(2016) Martijn P. van den Heuvel et al.   TRENDS IN COGNITIVE SCIENCES

Constraints and spandrels of interareal connectomes

(2016) Mikail Rubinov   Nature Communications

Optimally controlling the human connectome: the role of network topology

(2016) Richard F. Betzel et al.   Scientific Reports

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex

(2016) Tony Hyun Kim et al.   Cell Reports

Spatial Embedding and Wiring Cost Constrain the Functional Layout of the Cortical Network of Rodents and Primates

(2016) Szabolcs Horvát et al.   PLOS BIOLOGY

The Multilayer Connectome of Caenorhabditis elegans

(2016) Barry Bentley et al.   PLoS Computational Biology

Stimulation-Based Control of Dynamic Brain Networks

(2016) Sarah Feldt Muldoon et al.   PLoS Computational Biology

Socioeconomic status, white matter, and executive function in children

(2016) Alexandra Ursache et al.   Brain and Behavior

The connectomics of brain disorders

(2015) Alex Fornito et al.   NATURE REVIEWS NEUROSCIENCE

Functional System and Areal Organization of a Highly Sampled Individual Human Brain

(2015) Timothy O. Laumann et al.   NEURON

Clique topology reveals intrinsic geometric structure in neural correlations

(2015) Chad Giusti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlated gene expression supports synchronous activity in brain networks

(2015) J. Richiardi et al.   SCIENCE

Controllability of structural brain networks

(2015) Shi Gu et al.   Nature Communications

UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age

(2015) Cathie Sudlow et al.   PLOS MEDICINE

A Simple Mechanism for Beyond-Pairwise Correlations in Integrate-and-Fire Neurons

(2015) David A. Leen et al.   Journal of Mathematical Neuroscience

A predictive model of the cat cortical connectome based on cytoarchitecture and distance

(2014) Sarah F. Beul et al.   Brain Structure & Function

Spatially constrained adaptive rewiring in cortical networks creates spatially modular small world architectures

(2014) Nicholas Jarman et al.   Cognitive Neurodynamics

Wiring economy can account for cell body placement across species and brain areas

(2014) Marta Rivera-Alba et al.   CURRENT BIOLOGY

Annual Research Review: Growth connectomics - the organization and reorganization of brain networks during normal and abnormal development

(2014) Petra E. Vértes et al.   JOURNAL OF CHILD PSYCHOLOGY AND PSYCHIATRY

Can Simple Rules Control Development of a Pioneer Vertebrate Neuronal Network Generating Behavior?

(2014) A. Roberts et al.   JOURNAL OF NEUROSCIENCE

Beyond the Connectome: The Dynome

(2014) Nancy J. Kopell et al.   NEURON

Using Pareto optimality to explore the topology and dynamics of the human connectome

(2014) A. Avena-Koenigsberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Generative models of rich clubs in Hebbian neuronal networks and large-scale human brain networks

(2014) P. E. Vertes et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Developmental Approach to Predicting Neuronal Connectivity from Small Biological Datasets: A Gradient-Based Neuron Growth Model

(2014) Roman Borisyuk et al.   PLoS One

When do microcircuits produce beyond-pairwise correlations?

(2014) Andrea K. Barreiro et al.   Frontiers in Computational Neuroscience

Energy landscape and dynamics of brain activity during human bistable perception

(2014) Takamitsu Watanabe et al.   Nature Communications

Structurally-Constrained Relationships between Cognitive States in the Human Brain

(2014) Ann M. Hermundstad et al.   PLoS Computational Biology

Resolving Structural Variability in Network Models and the Brain

(2014) Florian Klimm et al.   PLoS Computational Biology

Influence of Wiring Cost on the Large-Scale Architecture of Human Cortical Connectivity

(2014) David Samu et al.   PLoS Computational Biology

The Neural Ring: An Algebraic Tool for Analyzing the Intrinsic Structure of Neural Codes

(2013) Carina Curto et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Robust detection of dynamic community structure in networks

(2013) Danielle S. Bassett et al.   CHAOS

Network attributes for segregation and integration in the human brain

(2013) Olaf Sporns   CURRENT OPINION IN NEUROBIOLOGY

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

Attention during natural vision warps semantic representation across the human brain

(2013) Tolga Çukur et al.   NATURE NEUROSCIENCE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

A Predictive Network Model of Cerebral Cortical Connectivity Based on a Distance Rule

(2013) Mária Ercsey-Ravasz et al.   NEURON

Spatially clustered neuronal assemblies comprise the microstructure of synchrony in chronically epileptic networks

(2013) Sarah Feldt Muldoon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural foundations of resting-state and task-based functional connectivity in the human brain

(2013) A. M. Hermundstad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phase transition in the economically modeled growth of a cellular nervous system

(2013) V. Nicosia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resting-brain functional connectivity predicted by analytic measures of network communication

(2013) J. Goni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cortical High-Density Counterstream Architectures

(2013) N. T. Markov et al.   SCIENCE

A pairwise maximum entropy model accurately describes resting-state human brain networks

(2013) Takamitsu Watanabe et al.   Nature Communications

Trade-off between Multiple Constraints Enables Simultaneous Formation of Modules and Hubs in Neural Systems

(2013) Yuhan Chen et al.   PLoS Computational Biology

Task-Based Core-Periphery Organization of Human Brain Dynamics

(2013) Danielle S. Bassett et al.   PLoS Computational Biology

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

The economy of brain network organization

(2012) Ed Bullmore et al.   NATURE REVIEWS NEUROSCIENCE

A Framework for Evaluating Pairwise and Multiway Synchrony Among Stimulus-Driven Neurons

(2012) Ryan C. Kelly et al.   NEURAL COMPUTATION

An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks

(2012) Sean L. Simpson et al.   NEUROIMAGE

Taxonomies of networks from community structure

(2012) Jukka-Pekka Onnela et al.   PHYSICAL REVIEW E

Simple models of human brain functional networks

(2012) P. E. Vertes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Critical Truths About Power Laws

(2012) M. P. H. Stumpf et al.   SCIENCE

Sequencing the Connectome

(2012) Anthony M. Zador et al.   PLOS BIOLOGY

Wiring Economy and Volume Exclusion Determine Neuronal Placement in the Drosophila Brain

(2011) Marta Rivera-Alba et al.   CURRENT BIOLOGY

Genetic Influences on Cost-Efficient Organization of Human Cortical Functional Networks

(2011) A. Fornito et al.   JOURNAL OF NEUROSCIENCE

Rich-Club Organization of the Human Connectome

(2011) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

Emerging Evidence of Connectomic Abnormalities in Schizophrenia

(2011) M. Rubinov et al.   JOURNAL OF NEUROSCIENCE

Weight-conserving characterization of complex functional brain networks

(2011) Mikail Rubinov et al.   NEUROIMAGE

Exponential Random Graph Modeling for Complex Brain Networks

(2011) Sean L. Simpson et al.   PLoS One

The Wiring Economy Principle: Connectivity Determines Anatomy in the Human Brain

(2011) Ashish Raj et al.   PLoS One

Sparse low-order interaction network underlies a highly correlated and learnable neural population code

(2011) E. Ganmor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissecting functional connectivity of neuronal microcircuits: experimental and theoretical insights

(2011) Sarah Feldt et al.   TRENDS IN NEUROSCIENCES

Neurobiologically Realistic Determinants of Self-Organized Criticality in Networks of Spiking Neurons

(2011) Mikail Rubinov et al.   PLoS Computational Biology

Sparse coding and high-order correlations in fine-scale cortical networks

(2010) Ifije E. Ohiorhenuan et al.   NATURE

Conserved and variable architecture of human white matter connectivity

(2010) Danielle S. Bassett et al.   NEUROIMAGE

Spatial networks

(2010) Marc Barthélemy   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Stability of graph communities across time scales

(2010) J.- C. Delvenne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unveiling the Neuromorphological Space

(2010) Luciano Da Fontoura Costa et al.   Frontiers in Computational Neuroscience

Efficient Physical Embedding of Topologically Complex Information Processing Networks in Brains and Computer Circuits

(2010) Danielle S. Bassett et al.   PLoS Computational Biology

Cortical hubs form a module for multisensory integration on top of the hierarchy of cortical networks

(2010) Zamora-López   Frontiers in Neuroinformatics

Quantitative Analysis and Biophysically Realistic Neural Modeling of the MEG Mu Rhythm: Rhythmogenesis and Modulation of Sensory-Evoked Responses

(2009) Stephanie R. Jones et al.   JOURNAL OF NEUROPHYSIOLOGY

Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI

(2009) Hui Shen et al.   NEUROIMAGE

Complex network measures of brain connectivity: Uses and interpretations

(2009) Mikail Rubinov et al.   NEUROIMAGE

Neurodegenerative Diseases Target Large-Scale Human Brain Networks

(2009) William W. Seeley et al.   NEURON

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors

(2009) Q. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cognitive fitness of cost-efficient brain functional networks

(2009) Danielle S. Bassett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Key role of coupling, delay, and noise in resting brain fluctuations

(2009) G. Deco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting human resting-state functional connectivity from structural connectivity

(2009) C. J. Honey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dysconnection in Schizophrenia: From Abnormal Synaptic Plasticity to Failures of Self-monitoring

(2009) K. E. Stephan et al.   SCHIZOPHRENIA BULLETIN

Power-Law Distributions in Empirical Data

(2009) Aaron Clauset et al.   SIAM REVIEW

A Maximum Entropy Model Applied to Spatial and Temporal Correlations from Cortical Networks In Vitro

(2008) A. Tang et al.   JOURNAL OF NEUROSCIENCE

Support vector machine-based classification of Alzheimer’s disease from whole-brain anatomical MRI

(2008) Benoît Magnin et al.   NEURORADIOLOGY

Mapping the Structural Core of Human Cerebral Cortex

(2008) Patric Hagmann et al.   PLOS BIOLOGY