Article
Plant Sciences
Ye-Rin Lee, Cheol Woo Kim, JiWon Han, Hyun Jin Choi, Koeun Han, Eun Su Lee, Do-Sun Kim, Jundae Lee, Muhammad Irfan Siddique, Hye-Eun Lee
Summary: Onion, a globally valuable vegetable crop, has a large genome and complex genetic characteristics. This study successfully constructed an onion genetic linkage map using GBS technology, identifying QTLs associated with sugar content across the genome, which will contribute to developing high sugar content cultivars.
Article
Agronomy
Donglan Zhao, Shan Wu, Xibin Dai, Yijun Su, Songbao Dai, An Zhang, Zhilin Zhou, Jun Tang, Qinghe Cao
Summary: This study utilized diploid Ipomoea trifida as a model plant to investigate the molecular mechanisms underlying storage root development in sweetpotato. By genotyping an F1 mapping population derived from I. trifida, three significant QTL associated with root diameter were identified. These findings will aid in the map-based cloning of genes controlling storage root-related traits and further uncover the genetic basis of root development in sweetpotato.
GENETIC RESOURCES AND CROP EVOLUTION
(2021)
Article
Plant Sciences
Wenchong Chen, Weiwu Yu, Ang Dong, Yanru Zeng, Huwei Yuan, Bingsong Zheng, Rongling Wu
Summary: This study utilizes advanced genotyping technologies to investigate the genetic structure of Torreya grandis, a species with high economic and ornamental values. A high-density linkage map is constructed, and the results suggest that the identified QTLs are relatively young and can be better utilized through clonal propagation.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Biotechnology & Applied Microbiology
Ran Wang, Siyuan Xing, Peter M. M. Bourke, Xiuquan Qi, Miaomiao Lin, Danny Esselink, Paul Arens, Roeland E. E. Voorrips, Richard G. F. Visser, Leiming Sun, Yunpeng Zhong, Hong Gu, Yukuo Li, Sikai Li, Chris Maliepaard, Jinbao Fang
Summary: Kiwifruit is a woody, perennial and deciduous vine with multiple ploidy levels. Despite the availability of genomic resources, SNP genotyping is still challenging due to different levels of polyploidy. In this study, a high-density SNP genotyping array was developed and evaluated for genetic studies and breeding applications in kiwifruit.
PLANT BIOTECHNOLOGY JOURNAL
(2023)
Article
Plant Sciences
Bixuan Cheng, Huihua Wan, Yu Han, Chao Yu, Le Luo, Huitang Pan, Qixiang Zhang
Summary: The study identified 46 QTLs for pigments in roses, providing a foundation for marker-assisted breeding of flower colors in tetraploid roses.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Plant Sciences
Haichuan Wang, Benjamin Campbell, Mary Happ, Samantha McConaughy, Aaron Lorenz, Keenan Amundsen, Qijian Song, Vincent Pantalone, David Hyten
Summary: The increasing rate of genetic gain for agronomic traits in farming requires the development of new molecular tools for genome-wide screening. The cost of current methods limits their use in screening breeding populations. Molecular inversion probes (MIPs) are a cost-effective and high-throughput genotyping method that can be used for soybean breeding programs. A set of 1K MIP SNPs for soybean was developed and tested on diverse germplasm, showing high genotyping accuracy and low cost. This makes MIPs a powerful tool for genomic selection in soybean breeding programs.
Article
Plant Sciences
Longyu Huang, Ming Li, Dingding Cao, Pingfang Yang
Summary: Lotus is a perennial aquatic plant with great value, the enlargement of lotus rhizome determines its yield, a genetic map and QTL mapping analysis were used to identify genes and markers associated with rhizome traits.
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2021)
Article
Plant Sciences
Rasyidah M. Razar, Peng Qi, Katrien M. Devos, Ali M. Missaoui
Summary: Genetic diversity in switchgrass germplasm can be used to increase biomass yield. The study analyzed polymorphism and segregation distortion in two F1 populations and identified QTL for biomass yield. The results showed the presence of QTL in both populations, which explained a significant portion of the phenotypic variation.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Biochemistry & Molecular Biology
Vijay Yepuri, Saakshi Jalali, Vishwnadharaju Mudunuri, Sai Pothakani, Nagesh Kancharla, S. Arockiasamy
Summary: In this study, the genetic mapping and identification of QTLs for yield and oil content traits were conducted in an F-2 population of Jatropha using genotyping-by-sequencing approach. A total of 83 QTLs were detected, providing valuable information for marker-assisted breeding and gene cloning.
MOLECULAR BIOLOGY REPORTS
(2022)
Article
Plant Sciences
Gurpreet Kaur, Mamta Pathak, Deepak Singla, Abhishek Sharma, Parveen Chhuneja, Navraj Kaur Sarao
Summary: Through hybridization to obtain the F-4 mapping population for genetic mapping of YMD resistance in bitter gourd, three QTLs associated with YMD resistance were identified on chromosomes 3, 4, and 5, providing valuable information for fine-mapping and marker-assisted selection for disease resistance in the future.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Plant Sciences
Harjot Singh Sohi, Manav Indra Singh Gill, Parveen Chhuneja, Naresh Kumar Arora, Sukhjinder Singh Maan, Jagmohan Singh
Summary: In this study, high leaf-anthocyanin reflective-index (ARI1) content cultivars of guava were developed through hybridization and a genetic linkage map was established. A marker closely associated with leaf anthocyanin content was identified.
Article
Plant Sciences
Yifei Jiang, Huaiyong Luo, Bolun Yu, Yingbin Ding, Yanping Kang, Li Huang, Xiaojing Zhou, Nian Liu, Weigang Chen, Jianbin Guo, Dongxin Huai, Yong Lei, Huifang Jiang, Liying Yan, Boshou Liao
Summary: This study focused on mapping the quantitative trait locus (QTL) of resistance to A. flavus infection in the peanut variety J11. Six novel resistant QTLs were identified on chromosomes A05, A08, B01, B03, and B10, with phenotypic variances explained ranging from 5.03% to 10.87%. The combination of these QTLs significantly improved resistance to A. flavus infection, providing insights into the genetic basis of resistance and potential for further improvement in peanuts.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Plant Sciences
Weiya Xue, Kathleen G. Haynes, Christopher R. Clarke, Xinshun Qu
Summary: This study investigates the genetic basis of early blight resistance in potato by using hybridization and field trials. Several quantitative trait loci (QTL) associated with early blight resistance were identified, providing new insights for marker-assisted selection in breeding for early blight resistance.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Fisheries
Jiamin Guo, Anqi Wang, Siqi Mao, Xiaoyan Xu, Jiale Li, Yubang Shen
Summary: This study constructed the first high-density genetic linkage map of black carp and identified QTL related to growth traits. The map provides valuable genomic resources for understanding economically important traits in black carp and can be used for comparative genomics and evolutionary studies.
Article
Plant Sciences
Dawei Wang, Lin Yang, Chen Shi, Siguang Li, Hongyan Tang, Chengzhong He, Nianhui Cai, Anan Duan, Hede Gong
Summary: In our study, a high-resolution genetic map of Simao pine using SLAF-seq technology was constructed for the first time. A total of 17 QTLs for four growth-related traits were identified based on this map. This provides valuable information for genomic studies and marker-assisted selection in Simao pine.
Article
Biotechnology & Applied Microbiology
Doori Park, Je Won Jung, Beom-Soon Choi, Murukarthick Jayakodi, Jeongsoo Lee, Jongsung Lim, Yeisoo Yu, Yong-Soo Choi, Myeong-Lyeol Lee, Yoonseong Park, Ik-Young Choi, Tae-Jin Yang, Owain R. Edwards, Gyoungju Nah, Hyung Wook Kwon
Article
Plant Sciences
Jonghoon Lee, Nur Kholilatul Izzah, Murukarthick Jayakodi, Sampath Perumal, Ho Jun Joh, Hyeon Ju Lee, Sang-Choon Lee, Jee Young Park, Ki-Woung Yang, Il-Sup Nou, Joodeok Seo, Jaeheung Yoo, Youngdeok Suh, Kyounggu Ahn, Ji Hyun Lee, Gyung Ja Choi, Yeisoo Yu, Heebal Kim, Tae-Jin Yang
Letter
Biochemistry & Molecular Biology
Yesheng Zhang, Shilai Zhang, Hui Liu, Binying Fu, Lijuan Li, Min Xie, Yue Song, Xin Li, Jing Cai, Wenting Wan, Ling Kui, Hui Huang, Jun Lyu, Yang Dong, Wensheng Wang, Liyu Huang, Jing Zhang, Qinzhong Yang, Qinli Shan, Qiong Li, Wangqi Huang, Dayun Tao, Muhua Wang, Mingsheng Chen, Yeisoo Yu, Rod A. Wing, Wen Wang, Fengyi Hu
Article
Genetics & Heredity
Na-Rae Kim, Kyunghee Kim, Sang-Choon Lee, Jung-Hoon Lee, Seong-Hyun Cho, Yeisoo Yu, Young-Dong Kim, Tae-Jin Yang
MITOCHONDRIAL DNA PART A
(2016)
Article
Biochemical Research Methods
Jianwei Zhang, Dave Kudrna, Ting Mu, Weiming Li, Dario Copetti, Yeisoo Yu, Jose Luis Goicoechea, Yang Lei, Rod A. Wing
Article
Multidisciplinary Sciences
Jianwei Zhang, Ling-Ling Chen, Feng Xing, David A. Kudrna, Wen Yao, Dario Copetti, Ting Mu, Weiming Li, Jia-Ming Song, Weibo Xie, Seunghee Lee, Jayson Talag, Lin Shao, Yue An, Chun-Liu Zhang, Yidan Ouyang, Shuai Sun, Wen-Biao Jiao, Fang Lv, Bogu Du, Meizhong Luo, Carlos Ernesto Maldonado, Jose Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao-Xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yijie Luo, Zhi-Wei Zhou, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing, Qifa Zhang
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2016)
Article
Multidisciplinary Sciences
Thomas Wicker, Yeisoo Yu, Georg Haberer, Klaus F. X. Mayer, Pradeep Reddy Marri, Steve Rounsley, Mingsheng Chen, Andrea Zuccolo, Olivier Panaud, Rod A. Wing, Stefan Roffler
NATURE COMMUNICATIONS
(2016)
Article
Multidisciplinary Sciences
Jianwei Zhang, Ling-Ling Chen, Shuai Sun, Dave Kudrna, Dario Copetti, Weiming Li, Ting Mu, Wen-Biao Jiao, Feng Xing, Seunghee Lee, Jayson Talag, Jia-Ming Song, Bogu Du, Weibo Xie, Meizhong Luo, Carlos Ernesto Maldonado, Jose Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao-xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yijie Luo, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing, Qifa Zhang
Correction
Ecology
Cheng-Ruei Lee, Baosheng Wang, Julius P. Mojica, Terezie Mandakova, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, Uffe Hellsten, Hope N. Hundley, Jenifer Johnson, Jane Grimwood, Kerrie Barry, Stephen Fairclough, Jerry W. Jenkins, Yeisoo Yu, Dave Kudrna, Jianwei Zhang, Jayson Talag, Wolfgang Golser, Kathryn Ghattas, M. Eric Schranz, Rod Wing, Martin A. Lysak, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell-Olds
NATURE ECOLOGY & EVOLUTION
(2017)
Article
Ecology
Cheng-Ruei Lee, Baosheng Wang, Julius P. Mojica, Terezie Mandakova, Kasavajhala Y. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, Uffe Hellsten, Hope N. Hundley, Jenifer Johnson, Jane Grimwood, Kerrie Barry, Stephen Fairclough, Jerry W. Jenkins, Yeisoo Yu, Dave Kudrna, Jianwei Zhang, Jayson Talag, Wolfgang Golser, Kathryn Ghattas, M. Eric Schranz, Rod Wing, Martin A. Lysak, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell-Olds
NATURE ECOLOGY & EVOLUTION
(2017)
Article
Genetics & Heredity
Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E. M. Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S. S. Ammiraju, Jayson Talag, Ann Danowitz, Luis F. Rivera, Andrea R. Gschwend, Christos Noutsos, Cheng-chieh Wu, Shu-min Kao, Jhih-wun Zeng, Fu-jin Wei, Qiang Zhao, Qi Feng, Moaine El Baidouri, Marie-Christine Carpentier, Eric Lasserre, Richard Cooke, Daniel da Rosa Farias, Luciano Carlos da Maia, Railson S. dos Santos, Kevin G. Nyberg, Kenneth L. McNally, Ramil Mauleon, Nickolai Alexandrov, Jeremy Schmutz, Dave Flowers, Chuanzhu Fan, Detlef Weigel, Kshirod K. Jena, Thomas Wicker, Mingsheng Chen, Bin Han, Robert Henry, Yue-ie C. Hsing, Nori Kurata, Antonio Costa de Oliveira, Olivier Panaud, Scott A. Jackson, Carlos A. Machado, Michael J. Sanderson, Manyuan Long, Doreen Ware, Rod A. Wing
Article
Biotechnology & Applied Microbiology
Jun Wang, Yeisoo Yu, Feng Tao, Jianwei Zhang, Dario Copetti, Dave Kudrna, Jayson Talag, Seunghee Lee, Rod A. Wing, Chuanzhu Fan