Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD sequencing

Comparison and development of EST–SSRs from two 454 sequencing libraries of Gossypium barbadense

(2014) Hantao Wang et al.   EUPHYTICA

Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.)

(2014) Shiyi Tang et al.   EUPHYTICA

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome

(2014) Mi-Jeong Yoo et al.   PLoS Genetics

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach

(2013) Venkatramana Pegadaraju et al.   BMC GENOMICS

Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus

(2013) Xun Chen et al.   BMC GENOMICS

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

(2012) Davide Scaglione et al.   BMC GENOMICS

Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L.

(2012) Huaan Yang et al.   BMC GENOMICS

High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing

(2012) Anja Bus et al.   BMC GENOMICS

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing

(2012) Nian Wang et al.   BMC PLANT BIOLOGY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

Development and mapping of SNP assays in allotetraploid cotton

(2012) Robert L. Byers et al.   THEORETICAL AND APPLIED GENETICS

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

(2011) James C Nelson et al.   BMC GENOMICS

Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense

(2011) Yu Yu et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L.

(2011) Renzhong Liu et al.   MOLECULAR BREEDING

Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

(2011) Ke Zhang et al.   MOLECULAR BREEDING

QTL mapping for fiber quality traits across multiple generations and environments in upland cotton

(2011) Fu-Ding Sun et al.   MOLECULAR BREEDING

Development and Evaluation of Intron and Insertion–Deletion Markers for Gossypium barbadense

(2011) Xiaqing Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

SNP marker diversity in common bean (Phaseolus vulgaris L.)

(2011) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

A preliminary analysis of genome structure and composition in Gossypium hirsutum

(2008) Wangzhen Guo et al.   BMC GENOMICS

A high-density integrative linkage map for Gossypium hirsutum

(2008) Zhongxu Lin et al.   EUPHYTICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One