Prevalence of Pre-antiretroviral-Treatment Drug Resistance by Gender, Age, and Other Factors in HIV-Infected Individuals Initiating Therapy in Kenya, 2013–2014

Surveillance of HIV-1 pol transmitted drug resistance in acutely and recently infected antiretroviral drug-naïve persons in rural western Kenya

(2017) Harris Onywera et al.   PLoS One

Increasing HIV-1 pretreatment drug resistance among antiretroviral-naïve adults initiating treatment between 2006 and 2014 in Nairobi, Kenya

(2016) Michael H. Chung et al.   AIDS

Prevalence of Transmitted Drug Resistance Mutations in HIV-1-Infected Drug-Naive Patients from Urban and Suburban Regions of Kenya

(2016) Simon Onsongo et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

HIV Drug Resistance Among Children Initiating First-Line Antiretroviral Treatment in Uganda

(2016) Cissy Kityo et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

High Rates of Drug Resistance Among Newly Diagnosed HIV-infected Children in the National Prevention of Mother-to-child Transmission Program in Togo

(2016) Mounerou Salou et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya

(2016) Clement Zeh et al.   PLoS One

Targeted screening of at-risk adults for acute HIV-1 infection in sub-Saharan Africa

(2015) Eduard J. Sanders et al.   AIDS

High Prevalence of HIV Low Abundance Drug-Resistant Variants in a Treatment-Naive Population in North Rift Kenya

(2015) Winfrida Cheriro et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds

(2015) Wan-Lin Yang et al.   PLoS Pathogens

HIV-1 protease inhibitor drug resistance in Kenyan antiretroviral treatment-naive and -experienced injection drug users and non-drug users

(2015) Valentine Budambula et al.   AIDS Research and Therapy

Emerging antiretroviral drug resistance in sub-Saharan Africa

(2014) Gert U. van Zyl et al.   AIDS

Oligonucleotide Ligation Assay Detects HIV Drug Resistance Associated With Virologic Failure Among Antiretroviral-Naive Adults in Kenya

(2014) Michael H. Chung et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Validation of an Oligonucleotide Ligation Assay for Quantification of Human Immunodeficiency Virus Type 1 Drug-Resistant Mutants by Use of Massively Parallel Sequencing

(2014) I. A. Beck et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The changing face of the HIV epidemic in sub-Saharan Africa

(2014) Portia C. Mutevedzi et al.   TROPICAL MEDICINE & INTERNATIONAL HEALTH

HIV diversity and drug resistance from plasma and non-plasma analytes in a large treatment programme in western Kenya

(2014) Rami Kantor et al.   Journal of the International AIDS Society

HIV-1 drug resistance-associated mutations among HIV-1 infected drug-naïve antenatal clinic attendees in rural Kenya

(2013) Michael Kiptoo et al.   BMC INFECTIOUS DISEASES

Birds of a feather: homophily and sexual network structure in sub-Saharan Africa

(2013) C Kenyon et al.   INTERNATIONAL JOURNAL OF STD & AIDS

Emergence of HIV Drug Resistance During First- and Second-Line Antiretroviral Therapy in Resource-Limited Settings

(2013) Mina C. Hosseinipour et al.   JOURNAL OF INFECTIOUS DISEASES

Low Prevalence of Transmitted HIV Type 1 Drug Resistance Among Antiretroviral-Naive Adults in a Rural HIV Clinic in Kenya

(2012) Amin S. Hassan et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resource-limited settings: a global collaborative study and meta-regression analysis

(2012) Ravindra K Gupta et al.   LANCET

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

(2012) Andreas Wilm et al.   NUCLEIC ACIDS RESEARCH

Differential Persistence of Transmitted HIV-1 Drug Resistance Mutation Classes

(2011) Vivek Jain et al.   JOURNAL OF INFECTIOUS DISEASES

HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study

(2011) Raph L Hamers et al.   LANCET INFECTIOUS DISEASES

Transmitted HIV Type 1 Drug Resistance Among Individuals with Recent HIV Infection in East and Southern Africa

(2010) Matt A. Price et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

HIV Type 1 Subtype Diversity and Drug Resistance among HIV Type 1-Infected Kenyan Patients Initiating Antiretroviral Therapy

(2009) Raphael W. Lihana et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Impact of Prior HAART Use on Clinical Outcomes in a Large Kenyan HIV Treatment Program

(2009) Michael Chung et al.   CURRENT HIV RESEARCH

Age-disparate and intergenerational sex in southern Africa: the dynamics of hypervulnerability

(2008) Suzanne Leclerc-Madlala   AIDS

Preexisting Resistance to Nonnucleoside Reverse‐Transcriptase Inhibitors Predicts Virologic Failure of an Efavirenz‐Based Regimen in Treatment‐Naive HIV‐1–Infected Subjects

(2008) Daniel R. Kuritzkes et al.   JOURNAL OF INFECTIOUS DISEASES

Persistence of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection

(2008) S. J. Little et al.   JOURNAL OF VIROLOGY