A phylogeny of kingfishers reveals an Indomalayan origin and elevated rates of diversification on oceanic islands

Avian higher level biogeography: Southern Hemispheric origins or Southern Hemispheric relicts?

(2017) Gerald Mayr   JOURNAL OF BIOGEOGRAPHY

Conceptual and analytical worldviews shape differences about global avian biogeography

(2017) Joel Cracraft et al.   JOURNAL OF BIOGEOGRAPHY

Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models

(2017) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

(2016) Brian R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

(2016) Robert G. Moyle et al.   Nature Communications

Bayesian model selection with BAMM: effects of the model prior on the inferred number of diversification shifts

(2016) Jonathan S. Mitchell et al.   Methods in Ecology and Evolution

Avian Diversification Patterns across the K-Pg Boundary: Influence of Calibrations, Datasets, and Model Misspecification1

(2015) Daniel T. Ksepka et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Speciation dynamics during the global radiation of extant bats

(2015) Jeff J. Shi et al.   EVOLUTION

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae: Todiramphus)

(2015) M. J. Andersen et al.   Royal Society Open Science

A new time tree reveals Earth historys imprint on the evolution of modern birds

(2015) S. Claramunt et al.   Science Advances

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

On the Middle Miocene avifauna of Maboko Island, Kenya

(2014) Gerald Mayr   GEOBIOS

Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds

(2014) Kevin J. Burns et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Phylogeography of the Variable Dwarf-KingfisherCeyx Lepidus(Aves: Alcedinidae) inferred from mitochondrial and nuclear DNA sequences

(2013) Michael J. Andersen et al.   AUK

The palaeogeography of Sundaland and Wallacea since the Late Jurassic

(2013) Robert Hall   JOURNAL OF LIMNOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Analysis of Biogeography when the Number of Areas is Large

(2013) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

Molecular systematics of the world's most polytypic bird: thePachycephala pectoralis/melanura(Aves: Pachycephalidae) species complex

(2013) Michael J. Andersen et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Extensive color polymorphism in the southeast Asian oriental dwarf kingfisher Ceyx erithaca: a result of gene flow during population divergence?

(2010) Haw Chuan Lim et al.   JOURNAL OF AVIAN BIOLOGY

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

(2010) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New specimens of the avian taxa Eurotrochilus (Trochilidae) and Palaeotodus (Todidae) from the early Oligocene of Germany

(2010) Gerald Mayr et al.   Palaeontologische Zeitschrift

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

(2009) Robert G. Moyle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE ORIGIN OF AFROTROPICAL KINGFISHERS

(2008) C. H. FRY   IBIS

Systematics and biogeography of the shrike-babblers (Pteruthius): Species limits, molecular phylogenetics, and diversification patterns across southern Asia

(2008) Sushma Reddy   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY