WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark

Molecular characterisation of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli isolates from hospital and ambulatory patients in Germany

(2017) Michael Pietsch et al.   VETERINARY MICROBIOLOGY

Multilocus sequence typing and CTX-M characterization of ESBL-producing E. coli: a prospective single-centre study in Lower Saxony, Germany

(2016) G. GERHOLD et al.   EPIDEMIOLOGY AND INFECTION

Use of WGS data for investigation of a long-term NDM-1-producingCitrobacter freundiioutbreak and secondaryin vivospread ofblaNDM-1toEscherichia coli,Klebsiella pneumoniaeandKlebsiella oxytoca

(2016) Anette M. Hammerum et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Distribution of ESBLs, AmpC β-lactamases and carbapenemases among Enterobacteriaceae isolates causing intra-abdominal and urinary tract infections in the Asia-Pacific region during 2008–14: results from the Study for Monitoring Antimicrobial Resistance Trends (SMART)

(2016) Shio-Shin Jean et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

(2016) Philip T. L. C. Clausen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Clinical Epidemiology and Molecular Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Nepal: Characteristics of Sequence Types 131 and 648

(2015) Jatan Bahadur Sherchan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of Antimicrobial Resistance and Extended-Spectrumβ-Lactamase Genes inEscherichia coliIsolated from Chickens

(2015) Panpan Tong et al.   Foodborne Pathogens and Disease

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

(2015) Anne Holmes et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Drug susceptibility and molecular epidemiology ofEscherichia coliin bloodstream infections in Shanghai, China, 2011–2013

(2015) Sheng-Yuan Zhao et al.   Infectious Diseases

Nationwide high prevalence of CTX-M and an increase of CTX-M-55 in Escherichia coli isolated from patients with community-onset infections in Chinese county hospitals

(2014) Jing Zhang et al.   BMC INFECTIOUS DISEASES

Pandemic lineages of extraintestinal pathogenic Escherichia coli

(2014) L.W. Riley   CLINICAL MICROBIOLOGY AND INFECTION

Escherichia coli ST131, an Intriguing Clonal Group

(2014) M.-H. Nicolas-Chanoine et al.   CLINICAL MICROBIOLOGY REVIEWS

Characterization of Third-Generation Cephalosporin-Resistant Escherichia coli from Bloodstream Infections in Denmark

(2014) Frank Hansen et al.   Microbial Drug Resistance

Dominance of CTX-M-Type Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli Isolated from Patients with Community-Onset and Hospital-Onset Infection in China

(2014) Shu Xia et al.   PLoS One

Characterization of ESBL-producing Escherichia coli and Klebsiella pneumoniae from bloodstream infections in three hospitals in Bucharest, Romania: a preliminary study

(2014) Adriana Hristea et al.   Infectious Diseases

The Epidemic of Extended-Spectrum- -Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H30-Rx

(2013) L. B. Price et al.   mBio

Clonal Composition and Community Clustering of Drug-Susceptible and -Resistant Escherichia coli Isolates from Bloodstream Infections

(2012) Sheila Adams-Sapper et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

High-Resolution Two-Locus Clonal Typing of Extraintestinal Pathogenic Escherichia coli

(2012) Scott J. Weissman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increasing consumption of antimicrobial agents in Denmark parallels increasing resistance in Escherichia coli bloodstream isolates

(2012) Line Skjøt-Rasmussen et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Molecular epidemiology of Escherichia coli producing CTX-M β-lactamases: the worldwide emergence of clone ST131 O25:H4

(2010) Gisele Peirano et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

(2008) Françoise Jaureguy et al.   BMC GENOMICS