Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars

Effects of biochar and compost amendments on soil physico-chemical properties and the total community within a temperate agricultural soil

(2016) Ibrahim S. Abujabhah et al.   APPLIED SOIL ECOLOGY

Microbial community structure and predicted bacterial metabolic functions in biochar pellets aged in soil after 34 months

(2016) Daquan Sun et al.   APPLIED SOIL ECOLOGY

Mineral–Biochar Composites: Molecular Structure and Porosity

(2016) Aditya Rawal et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biochar has no effect on soil respiration across Chinese agricultural soils

(2016) Xiaoyu Liu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biochar stability in soil: meta-analysis of decomposition and priming effects

(2015) Jinyang Wang et al.   Global Change Biology Bioenergy

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Soil particle size fractions harbour distinct microbial communities and differ in potential for microbial mineralisation of organic pollutants

(2015) Michael Hemkemeyer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biochar as an electron shuttle for reductive dechlorination of pentachlorophenol by Geobacter sulfurreducens

(2015) Linpeng Yu et al.   Scientific Reports

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

The Electrochemical Properties of Biochars and How They Affect Soil Redox Properties and Processes

(2015) Stephen Joseph et al.   Agronomy-Basel

High-Resolution and Specific Detection of Bacteria on Complex Surfaces Using Nanoparticle Probes and Electron Microscopy

(2015) Jun Ye et al.   PLoS One

Comparative analysis of the microbial communities in agricultural soil amended with enhanced biochars or traditional fertilisers

(2014) Shaun Nielsen et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

A Previously Uncharacterized, Nonphotosynthetic Member of the Chromatiaceae Is the Primary CO2-Fixing Constituent in a Self-Regenerating Biocathode

(2014) Zheng Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Redox Properties of Plant Biomass-Derived Black Carbon (Biochar)

(2014) Laura Klüpfel et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterization of an enriched biochar

(2014) Chee H. Chia et al.   JOURNAL OF ANALYTICAL AND APPLIED PYROLYSIS

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Humic substances as fully regenerable electron acceptors in recurrently anoxic environments

(2014) Laura Klüpfel et al.   Nature Geoscience

Comparing samples—part II

(2014) Martin Krzywinski et al.   NATURE METHODS

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer byGeobacter sulfurreducens PCA

(2014) Yimo Liu et al.   Environmental Microbiology Reports

Visualized effect of oxidation on magnetic recording fidelity in pseudo-single-domain magnetite particles

(2014) Trevor P. Almeida et al.   Nature Communications

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Time behavior and capacitance analysis of nano-Fe3O4 added microbial fuel cells

(2013) Xinhong Peng et al.   BIORESOURCE TECHNOLOGY

Conductive Magnetite Nanoparticles Accelerate the Microbial Reductive Dechlorination of Trichloroethene by Promoting Interspecies Electron Transfer Processes

(2013) Federico Aulenta et al.   ChemSusChem

Mineral composition and charcoal determine the bacterial community structure in artificial soils

(2013) Guo-Chun Ding et al.   FEMS MICROBIOLOGY ECOLOGY

Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community

(2013) Johannes Harter et al.   ISME Journal

Electricity production and electrochemical impedance modeling of microbial fuel cells under static magnetic field

(2013) Yao Yin et al.   JOURNAL OF POWER SOURCES

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Changes of biomass and bacterial communities in biological activated carbon filters for drinking water treatment

(2013) Xiaobin Liao et al.   PROCESS BIOCHEMISTRY

Life in the ‘charosphere’ – Does biochar in agricultural soil provide a significant habitat for microorganisms?

(2013) Richard S. Quilliam et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lō´ihi, Hawai´l

(2013) Esther Singer et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Long-term effect of set potential on biocathodes in microbial fuel cells: Electrochemical and phylogenetic characterization

(2012) Xue Xia et al.   BIORESOURCE TECHNOLOGY

Heterogeneity of microbial community structures inside the up-flow biological activated carbon (BAC) filters for the treatment of drinking water

(2012) Xiaobin Liao et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

The ‘porin-cytochrome’ model for microbe-to-mineral electron transfer

(2012) David J. Richardson et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Nanoscale organo-mineral reactions of biochars in ferrosol: an investigation using microscopy

(2012) Yun Lin et al.   PLANT AND SOIL

Microbial community analysis in biocathode microbial fuel cells packed with different materials

(2012) Yanmei Sun et al.   AMB Express

A quantitative review of the effects of biochar application to soils on crop productivity using meta-analysis

(2011) S. Jeffery et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Genomic Potential of Marinobacter aquaeolei, a Biogeochemical “Opportunitroph”

(2011) Esther Singer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of Biochar Application to Soil on the Root-Associated Bacterial Community Structure of Fully Developed Greenhouse Pepper Plants

(2011) Max Kolton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Simultaneous Immobilization of Lead and Atrazine in Contaminated Soils Using Dairy-Manure Biochar

(2011) Xinde Cao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae

(2011) Kevin B. Hallberg et al.   EXTREMOPHILES

Analytical electron microscopy of black carbon and microaggregated mineral matter in Amazonian dark Earth

(2011) C.H. CHIA et al.   JOURNAL OF MICROSCOPY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Biochar induced soil microbial community change: Implications for biogeochemical cycling of carbon, nitrogen and phosphorus

(2011) Craig R. Anderson et al.   PEDOBIOLOGIA

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

Structure of a bacterial cell surface decaheme electron conduit

(2011) T. A. Clarke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biochar effects on soil biota – A review

(2011) Johannes Lehmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mechanisms of biochar decreasing methane emission from Chinese paddy soils

(2011) Youzhi Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bioenergetic challenges of microbial iron metabolisms

(2011) Lina J. Bird et al.   TRENDS IN MICROBIOLOGY

Influence of fast pyrolysis temperature on biochar labile fraction and short-term carbon loss in a loamy soil

(2010) Esben W. Bruun et al.   BIOMASS & BIOENERGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping

(2010) S. Buschmann et al.   SCIENCE

Sustainable biochar to mitigate global climate change

(2010) Dominic Woolf et al.   Nature Communications

An improved method for nanogoldin situhybridization visualized with environmental scanning electron microscopy

(2009) C.J. EHRHARDT et al.   JOURNAL OF MICROSCOPY

Bacterial Community Composition in Brazilian Anthrosols and Adjacent Soils Characterized Using Culturing and Molecular Identification

(2009) B. O’Neill et al.   MICROBIAL ECOLOGY

Electron energy loss spectroscopy andab initioinvestigation of iron oxide nanomaterials grown by a hydrothermal process

(2009) Shih-Yun Chen et al.   PHYSICAL REVIEW B

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle

(2008) Murray Ronald Badger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Protein-based organelles in bacteria: carboxysomes and related microcompartments

(2008) Todd O. Yeates et al.   NATURE REVIEWS MICROBIOLOGY