A genomic perspective on stoichiometric regulation of soil carbon cycling

A soil carbon proxy to predict CH 4 and N 2 O emissions from rewetted agricultural peatlands

(2016) Rongzhong Ye et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Evaluating community–environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly

(2016) Hsiao-Pei Lu et al.   ISME Journal

Opposing effects of nitrogen and phosphorus on soil microbial metabolism and the implications for soil carbon storage

(2016) Christopher Poeplau et al.   SOIL BIOLOGY & BIOCHEMISTRY

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

(2016) Benjamin R. K. Roller et al.   Nature Microbiology

Do microorganism stoichiometric alterations affect carbon sequestration in paddy soil subjected to phosphorus input?

(2015) ZhiJian Zhang et al.   ECOLOGICAL APPLICATIONS

The application of ecological stoichiometry to plant–microbial–soil organic matter transformations

(2015) Sophie Zechmeister-Boltenstern et al.   ECOLOGICAL MONOGRAPHS

Thermodynamic constraints on the utility of ecological stoichiometry for explaining global biogeochemical patterns

(2015) Ashley M. Helton et al.   ECOLOGY LETTERS

Explicitly representing soil microbial processes in Earth system models

(2015) William R. Wieder et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes

(2015) Thomas Mock et al.   GLOBAL CHANGE BIOLOGY

Microbial response to simulated global change is phylogenetically conserved and linked with functional potential

(2015) Anthony S Amend et al.   ISME Journal

Global biogeochemical impacts of phytoplankton: a trait-based perspective

(2015) Elena Litchman et al.   JOURNAL OF ECOLOGY

metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

(2015) Johan Bengtsson-Palme et al.   Molecular Ecology Resources

Incorporating phosphorus cycling into global modeling efforts: a worthwhile, tractable endeavor

(2015) Sasha C. Reed et al.   NEW PHYTOLOGIST

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Carbon mineralization is promoted by phosphorus and reduced by nitrogen addition in the organic horizon of northern hardwood forests

(2015) Melany Fisk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen and phosphorus constrain labile and stable carbon turnover in lowland tropical forest soils

(2015) Andrew T. Nottingham et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial respiration per unit biomass increases with carbon-to-nutrient ratios in forest soils

(2015) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distribution of phosphatase activity and various bacterial phyla in the rhizosphere of Hordeum vulgare L. depending on P availability

(2015) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Indigenous Nitrogen Supply of Rice Is Predicted by Soil Organic Carbon

(2015) Matthew B. Espe et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

(2015) Marcel Huntemann et al.   Standards in Genomic Sciences

Microbial resource utilization traits and trade-offs: implications for community structure, functioning, and biogeochemical impacts at present and in the future

(2015) Elena Litchman et al.   Frontiers in Microbiology

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

(2014) Harald Cederlund et al.   APPLIED SOIL ECOLOGY

Soil carbon sensitivity to temperature and carbon use efficiency compared across microbial-ecosystem models of varying complexity

(2014) Jianwei Li et al.   BIOGEOCHEMISTRY

Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam

(2014) Juanjuan Chai et al.   BMC EVOLUTIONARY BIOLOGY

Microbial dormancy improves development and experimental validation of ecosystem model

(2014) Gangsheng Wang et al.   ISME Journal

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

A fully traits-based approach to modeling global vegetation distribution

(2014) P. M. van Bodegom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

(2014) K. S. Ramirez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter

(2014) Céline Mouginot et al.   SOIL BIOLOGY & BIOCHEMISTRY

CATS regression - a model-based approach to studying trait-based community assembly

(2014) David I. Warton et al.   Methods in Ecology and Evolution

Cellulolytic potential under environmental changes in microbial communities from grassland litter

(2014) Renaud Berlemont et al.   Frontiers in Microbiology

A Three-Way Trade-Off Maintains Functional Diversity under Variable Resource Supply

(2013) Kyle F. Edwards et al.   AMERICAN NATURALIST

An experimental test of the hypothesis of non-homeostatic consumer stoichiometry in a plant litter-microbe system

(2013) Nicolas Fanin et al.   ECOLOGY LETTERS

Ecological stoichiometry: An elementary approach using basic principles

(2013) Dag O. Hessen et al.   LIMNOLOGY AND OCEANOGRAPHY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Differential Nutrient Limitation of Soil Microbial Biomass and Metabolic Quotients (qCO2): Is There a Biological Stoichiometry of Soil Microbes?

(2013) Wyatt H. Hartman et al.   PLoS One

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional traits explain phytoplankton community structure and seasonal dynamics in a marine ecosystem

(2012) Kyle F. Edwards et al.   ECOLOGY LETTERS

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Metabolic specialization and the assembly of microbial communities

(2012) David R Johnson et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Allometric scaling and taxonomic variation in nutrient utilization traits and maximum growth rate of phytoplankton

(2012) Kyle F. Edwards et al.   LIMNOLOGY AND OCEANOGRAPHY

Stoichiometric flexibility as a regulator of carbon and nutrient cycling in terrestrial ecosystems under change

(2012) Seeta A. Sistla et al.   NEW PHYTOLOGIST

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies

(2012) Adrian Ho et al.   Environmental Microbiology Reports

Trait-Based Representation of Biological Nitrification: Model Development, Testing, and Predicted Community Composition

(2012) Nicholas J. Bouskill et al.   Frontiers in Microbiology

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

Optimization of Biomass Composition Explains Microbial Growth-Stoichiometry Relationships

(2011) Oskar Franklin et al.   AMERICAN NATURALIST

Evolutionary trade-offs among decomposers determine responses to nitrogen enrichment

(2011) Kathleen K. Treseder et al.   ECOLOGY LETTERS

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Modeling Diverse Communities of Marine Microbes

(2010) Michael J. Follows et al.   Annual Review of Marine Science

Terrestrial phosphorus limitation: mechanisms, implications, and nitrogen–phosphorus interactions

(2010) Peter M. Vitousek et al.   ECOLOGICAL APPLICATIONS

Stoichiometric controls on carbon, nitrogen, and phosphorus dynamics in decomposing litter

(2010) Stefano Manzoni et al.   ECOLOGICAL MONOGRAPHS

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches

(2010) E. K. Hall et al.   ECOSYSTEMS

Biogeochemistry of paddy soils

(2010) Ingrid Kögel-Knabner et al.   GEODERMA

Ocean nutrient ratios governed by plankton biogeography

(2010) Thomas S. Weber et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics

(2010) Sara Vieira-Silva et al.   PLoS Genetics

Towards an integration of ecological stoichiometry and the metabolic theory of ecology to better understand nutrient cycling

(2009) Andrew P. Allen et al.   ECOLOGY LETTERS

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Rates of in situ carbon mineralization in relation to land-use, microbial community and edaphic characteristics

(2009) Michael S. Strickland et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS

Soil carbon stocks in experimental mesocosms are dependent on the rate of labile carbon, nitrogen and phosphorus inputs to soils

(2008) M. A. Bradford et al.   FUNCTIONAL ECOLOGY

N : P ratios influence litter decomposition and colonization by fungi and bacteria in microcosms

(2008) Sabine Güsewell et al.   FUNCTIONAL ECOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA