Comparative Analysis of Fruit Ripening-Related miRNAs and Their Targets in Blueberry Using Small RNA and Degradome Sequencing

Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants

(2016) Lívia Vargas et al.   Biotechnology for Biofuels

Comparative transcriptome sequencing and de novo analysis of Vaccinium corymbosum during fruit and color development

(2016) Lingli Li et al.   BMC PLANT BIOLOGY

Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

(2016) Thangasamy Saminathan et al.   BMC PLANT BIOLOGY

Class III HD-Zip activity coordinates leaf development in Physcomitrella patens

(2016) Hoichong Karen Yip et al.   DEVELOPMENTAL BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification and transcript profiles of citrus growth-regulating factor genes involved in the regulation of leaf and fruit development

(2016) Xiao Liu et al.   MOLECULAR BIOLOGY REPORTS

Identification of Known and Novel microRNAs and Their Targets in Peach (Prunus persica) Fruit by High-Throughput Sequencing

(2016) Chunhua Zhang et al.   PLoS One

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

(2016) Juxun Wu et al.   Frontiers in Plant Science

Identification of MicroRNAs and Their Targets Associated with Fruit-Bagging and Subsequent Sunlight Re-exposure in the “Granny Smith” Apple Exocarp Using High-Throughput Sequencing

(2016) Dong Qu et al.   Frontiers in Plant Science

A Review of Auxin Response Factors (ARFs) in Plants

(2016) Si-Bei Li et al.   Frontiers in Plant Science

RNA Editing and Its Molecular Mechanism in Plant Organelles

(2016) Mizuho Ichinose et al.   Genes

Developmental and stress regulation on expression of a novel miRNA, Fan-miR73 and its target ABI5 in strawberry

(2016) Dongdong Li et al.   Scientific Reports

Profiling microRNA expression during multi-staged date palm ( Phoenix dactylifera L.) fruit development

(2015) Chengqi Xin et al.   GENOMICS

Auxin transporters and binding proteins at a glance

(2015) P. Grones et al.   JOURNAL OF CELL SCIENCE

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

The tarani mutation alters surface curvature in Arabidopsis leaves by perturbing the patterns of surface expansion and cell division

(2015) Premananda Karidas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of Arabidopsis thaliana NRT1/PTR FAMILY (NPF) proteins capable of transporting plant hormones

(2015) Yasutaka Chiba et al.   JOURNAL OF PLANT RESEARCH

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology

(2015) Mohammad Amin Omidbakhshfard et al.   Molecular Plant

Complex Interplay of Hormonal Signals during Grape Berry Ripening

(2015) Ana Fortes et al.   MOLECULES

Functional dissection of a plant Argonaute

(2015) Károly Fátyol et al.   NUCLEIC ACIDS RESEARCH

AmicroRNAallele that emerged prior to apple domestication may underlie fruit size evolution

(2015) Jia-Long Yao et al.   PLANT JOURNAL

Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato

(2015) Xiaoyun Jia et al.   PLANTA

Meta-regulation of Arabidopsis Auxin Responses Depends on tRNA Maturation

(2015) Johannes Leitner et al.   Cell Reports

RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

(2015) Vikas Gupta et al.   GigaScience

A non-canonical plant microRNA target site

(2014) Cécile Brousse et al.   NUCLEIC ACIDS RESEARCH

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Rapid and Efficient Isolation of High-Quality Small RNAs from Recalcitrant Plant Species Rich in Polyphenols and Polysaccharides

(2014) Jun Peng et al.   PLoS One

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

Profiling microRNAs and their targets in an important fleshy fruit: Tomato (Solanum lycopersicum)

(2013) Muhammad Din et al.   GENE

Transcriptome-wide analysis of dynamic variations in regulation modes of grapevine microRNAs on their target genes during grapevine development

(2013) Chen Wang et al.   PLANT MOLECULAR BIOLOGY

High-Throughput Sequencing and Degradome Analysis Identify miRNAs and Their Targets Involved in Fruit Senescence of Fragaria ananassa

(2013) Xiangbin Xu et al.   PLoS One

Characterization of the small RNA component of leaves and fruits from four different cucurbit species

(2012) Guru Jagadeeswaran et al.   BMC GENOMICS

Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics

(2012) Chen Wang et al.   BMC GENOMICS

Grape berry ripening delay induced by a pre-véraison NAA treatment is paralleled by a shift in the expression pattern of auxin- and ethylene-related genes

(2012) Fiorenza Ziliotto et al.   BMC PLANT BIOLOGY

Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

(2012) Hong Zhu et al.   BMC PLANT BIOLOGY

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

Two strawberry miR159 family members display developmental-specific expression patterns in the fruit receptacle and cooperatively regulate Fa-GAMYB

(2012) Fabiana Csukasi et al.   NEW PHYTOLOGIST

Characterization of microRNAs Expressed during Secondary Wall Biosynthesis in Acacia mangium

(2012) Seong Siang Ong et al.   PLoS One

MicroRNA–Mediated Repression of the Seed Maturation Program during Vegetative Development in Arabidopsis

(2012) Xurong Tang et al.   PLoS Genetics

Blueberries and Their Anthocyanins: Factors Affecting Biosynthesis and Properties

(2011) Winny Routray et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Conservation and divergence in plant microRNAs

(2011) Matthew W. Jones-Rhoades   PLANT MOLECULAR BIOLOGY

Gene Expression and Metabolite Profiling of Developing Highbush Blueberry Fruit Indicates Transcriptional Regulation of Flavonoid Metabolism and Activation of Abscisic Acid Metabolism

(2011) M. Zifkin et al.   PLANT PHYSIOLOGY

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

Sequestration of auxin by the indole-3-acetic acid-amido synthetase GH3-1 in grape berry (Vitis vinifera L.) and the proposed role of auxin conjugation during ripening

(2010) C. Bottcher et al.   JOURNAL OF EXPERIMENTAL BOTANY

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Small RNA Diversity in Plants and its Impact in Development

(2009) Christine Lelandais-Briere et al.   CURRENT GENOMICS

Building ubiquitin chains: E2 enzymes at work

(2009) Yihong Ye et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

The BAG proteins: a ubiquitous family of chaperone regulators

(2008) M. Kabbage et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Abscisic acid deficiency in the tomato mutant high-pigment 3 leading to increased plastid number and higher fruit lycopene content

(2008) Navot Galpaz et al.   PLANT JOURNAL