Deconvolution of heterogeneous wound tissue samples into relative macrophage phenotype composition via models based on gene expression

Transcriptome analysis of IL-10-stimulated (M2c) macrophages by next-generation sequencing

(2017) Emily B. Lurier et al.   IMMUNOBIOLOGY

In vitroresponse of macrophages to ceramic scaffolds used for bone regeneration

(2016) Pamela L. Graney et al.   Journal of the Royal Society Interface

Response of human macrophages to wound matrices in vitro

(2016) Claire E. Witherel et al.   WOUND REPAIR AND REGENERATION

Sequential delivery of immunomodulatory cytokines to facilitate the M1-to-M2 transition of macrophages and enhance vascularization of bone scaffolds

(2015) Kara L. Spiller et al.   BIOMATERIALS

Relative Expression of Proinflammatory and Antiinflammatory Genes Reveals Differences between Healing and Nonhealing Human Chronic Diabetic Foot Ulcers

(2015) Sina Nassiri et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Transcriptomic Analysis of Human Polarized Macrophages: More than One Role of Alternative Activation?

(2015) Eleonora Derlindati et al.   PLoS One

The role of macrophage phenotype in vascularization of tissue engineering scaffolds

(2014) Kara L. Spiller et al.   BIOMATERIALS

An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples

(2014) V. K. Yadav et al.   BRIEFINGS IN BIOINFORMATICS

T Cell–Derived IL-22 Amplifies IL-1β–Driven Inflammation in Human Adipose Tissue: Relevance to Obesity and Type 2 Diabetes

(2014) Elise Dalmas et al.   DIABETES

Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation

(2014) Jia Xue et al.   IMMUNITY

Inhibition of Protein Geranylgeranylation Specifically Interferes with CD40-Dependent B Cell Activation, Resulting in a Reduced Capacity To Induce T Cell Immunity

(2014) Alexander Shimabukuro-Vornhagen et al.   JOURNAL OF IMMUNOLOGY

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Phenotypic Transitions of Macrophages Orchestrate Tissue Repair

(2013) Margaret L. Novak et al.   AMERICAN JOURNAL OF PATHOLOGY

Mesenchymal-transitioned cancer cells instigate the invasion of epithelial cancer cells through secretion of WNT3 and WNT5B

(2013) Shinichiro Kato et al.   CANCER SCIENCE

Computational deconvolution: extracting cell type-specific information from heterogeneous samples

(2013) Shai S Shen-Orr et al.   CURRENT OPINION IN IMMUNOLOGY

Enhanced Lymph Vessel Density, Remodeling, and Inflammation Are Reflected by Gene Expression Signatures in Dermal Lymphatic Endothelial Cells in Type 2 Diabetes

(2013) M. Haemmerle et al.   DIABETES

Sustained Inflammasome Activity in Macrophages Impairs Wound Healing in Type 2 Diabetic Humans and Mice

(2013) R. E. Mirza et al.   DIABETES

Blocking Interleukin-1  Induces a Healing-Associated Wound Macrophage Phenotype and Improves Healing in Type 2 Diabetes

(2013) R. E. Mirza et al.   DIABETES

CD28-inducible transcription factor DEC1 is required for efficient autoreactive CD4+T cell response

(2013) Marc Martínez-Llordella et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Monocyte Responses in the Context of Q Fever: From a Static Polarized Model to a Kinetic Model of Activation

(2013) Vikram Mehraj et al.   JOURNAL OF INFECTIOUS DISEASES

Unknown

(2013) Frederic Reynier et al.   MOLECULAR MEDICINE

A genomic toolkit to investigate kinesin and myosin motor function in cells

(2013) Zoltan Maliga et al.   NATURE CELL BIOLOGY

Diffuse near-infrared spectroscopy prediction of healing in diabetic foot ulcers: A human study and cost analysis

(2012) Michael S. Weingarten et al.   WOUND REPAIR AND REGENERATION

Use of flow cytometry for high-throughput cell population estimates in brain tissue

(2012) Nicole A. Young et al.   Frontiers in Neuroanatomy

Classification of dendritic cell phenotypes from gene expression data

(2011) Giacomo Tuana et al.   BMC IMMUNOLOGY

Dysregulation of monocyte/macrophage phenotype in wounds of diabetic mice

(2011) Rita Mirza et al.   CYTOKINE

An unrestrained proinflammatory M1 macrophage population induced by iron impairs wound healing in humans and mice

(2011) Anca Sindrilaru et al.   JOURNAL OF CLINICAL INVESTIGATION

Human Keratinocytes' Response to Injury Upregulates CCL20 and Other Genes Linking Innate and Adaptive Immunity

(2011) Milène Kennedy-Crispin et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Sequential expression of macrophage anti-microbial/inflammatory and wound healing markers following innate, alternative and classical activation

(2010) F. M. Menzies et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

‘Young’ Oral Fibroblasts Are Geno/Phenotypically Distinct

(2010) S. Enoch et al.   JOURNAL OF DENTAL RESEARCH

Macrophage Dysfunction Impairs Resolution of Inflammation in the Wounds of Diabetic Mice

(2010) Savita Khanna et al.   PLoS One

Human Gingiva-Derived Mesenchymal Stem Cells Elicit Polarization of M2 Macrophages and Enhance Cutaneous Wound Healing

(2010) Qun-Zhou Zhang et al.   STEM CELLS

Smoking-Dependent Reprogramming of Alveolar Macrophage Polarization: Implication for Pathogenesis of Chronic Obstructive Pulmonary Disease

(2009) R. Shaykhiev et al.   JOURNAL OF IMMUNOLOGY

Identification of Two Distinct Macrophage Subsets with Divergent Effects Causing either Neurotoxicity or Regeneration in the Injured Mouse Spinal Cord

(2009) K. A. Kigerl et al.   JOURNAL OF NEUROSCIENCE

Overexpression of Apoptotic Cell Removal Receptor MERTK in Alveolar Macrophages of Cigarette Smokers

(2008) Angeliki Kazeros et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY