Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases

Can inflammatory bowel disease be permanently treated with short-term interventions on the microbiome?

(2015) Dana Berg et al.   Expert Review of Gastroenterology & Hepatology

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Diet, Metabolites, and “Western-Lifestyle” Inflammatory Diseases

(2014) Alison N. Thorburn et al.   IMMUNITY

Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition

(2014) Konstantinos Gerasimidis et al.   INFLAMMATORY BOWEL DISEASES

Normocaloric Diet Improves Asthma-Related Quality of Life in Obese Pubertal Adolescents

(2014) Jorge Agustin Luna-Pech et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

Oral, Capsulized, Frozen Fecal Microbiota Transplantation for RelapsingClostridium difficileInfection

(2014) Ilan Youngster et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Antibiotics and the gut microbiota

(2014) Sheetal R. Modi et al.   JOURNAL OF CLINICAL INVESTIGATION

DHA-Rich Tuna Oil Effectively Suppresses Allergic Symptoms in Mice Allergic to Whey or Peanut

(2014) Lieke WJ van den Elsen et al.   JOURNAL OF NUTRITION

Clinical and Mucosal Improvement With Specific Carbohydrate Diet in Pediatric Crohn Disease

(2014) Stanley A. Cohen et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Fecal Microbiota Transplantation in Inflammatory Bowel Disease

(2014) Gianluca Ianiro et al.   MEDICINE

Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis

(2014) Aurélien Trompette et al.   NATURE MEDICINE

Unbalanced Neonatal CD4+ T-Cell Immunity

(2014) Isabelle Debock et al.   Frontiers in Immunology

Species and genus level resolution analysis of gut microbiota in Clostridium difficile patients following fecal microbiota transplantation

(2014) Vijay Shankar et al.   Microbiome

CD25+ regulatory T cells transfer n-3 long chain polyunsaturated fatty acids-induced tolerance in mice allergic to cow's milk protein

(2013) L. W. J. van den Elsen et al.   ALLERGY

Dietary long chain n-3 polyunsaturated fatty acids prevent allergic sensitization to cow's milk protein in mice

(2013) L. W. J. van den Elsen et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Treatment of food anaphylaxis with traditional Chinese herbal remedies

(2013) Julie Wang   Current Opinion in Allergy and Clinical Immunology

Exclusive enteral nutrition and induction of remission of active Crohn’s disease in children

(2013) Andrew S Day et al.   Expert Review of Clinical Immunology

Therapeutic Potential of Fecal Microbiota Transplantation

(2013) Loek P. Smits et al.   GASTROENTEROLOGY

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Nutritional Therapy in Pediatric Crohn Disease

(2013) David L. Suskind et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile

(2013) Els van Nood et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Use of exclusive enteral nutrition in adults with Crohn’s disease: A review

(2013) Catherine L Wall   WORLD JOURNAL OF GASTROENTEROLOGY

The Microbiome and Inflammatory Bowel Disease: Is There a Therapeutic Role for Fecal Microbiota Transplantation?

(2012) Christopher J Damman et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Can we produce true tolerance in patients with food allergy?

(2012) M. Cecilia Berin et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis

(2012) Magali Noval Rivas et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Selective carbohydrate utilization by lactobacilli and bifidobacteria

(2012) D. Watson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Diversity of Bifidobacteria within the Infant Gut Microbiota

(2012) Francesca Turroni et al.   PLoS One

Effect of exclusive enteral nutrition on gut microflora function in children with Crohn's disease

(2012) Bo Tjellström et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Exogenous Stimuli Maintain Intraepithelial Lymphocytes via Aryl Hydrocarbon Receptor Activation

(2011) Ying Li et al.   CELL

Systematic Review of Intestinal Microbiota Transplantation (Fecal Bacteriotherapy) for Recurrent Clostridium difficile Infection

(2011) Ethan Gough et al.   CLINICAL INFECTIOUS DISEASES

A vegan or vegetarian diet substantially alters the human colonic faecal microbiota

(2011) J Zimmer et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Rifaximin-Extended Intestinal Release Induces Remission in Patients With Moderately Active Crohn's Disease

(2011) Cosimo Prantera et al.   GASTROENTEROLOGY

Fecal Transplantation, Through Colonoscopy, Is Effective Therapy for Recurrent Clostridium difficile Infection

(2011) Eero Mattila et al.   GASTROENTEROLOGY

Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

(2011) Natalie A. Molodecky et al.   GASTROENTEROLOGY

Intrinsic Requirement for the Vitamin D Receptor in the Development of CD8  -Expressing T Cells

(2011) D. Bruce et al.   JOURNAL OF IMMUNOLOGY

Control of TH17 cells occurs in the small intestine

(2011) Enric Esplugues et al.   NATURE

Bifidobacteria can protect from enteropathogenic infection through production of acetate

(2011) Shinji Fukuda et al.   NATURE

Border patrol: regulation of immunity, inflammation and tissue homeostasis at barrier surfaces by IL-22

(2011) Gregory F Sonnenberg et al.   NATURE IMMUNOLOGY

Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms

(2011) Jonna Jalanka-Tuovinen et al.   PLoS One

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Natural Aryl Hydrocarbon Receptor Ligands Control Organogenesis of Intestinal Lymphoid Follicles

(2011) E. A. Kiss et al.   SCIENCE

The Toll-Like Receptor 2 Pathway Establishes Colonization by a Commensal of the Human Microbiota

(2011) J. L. Round et al.   SCIENCE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Activation of the Aryl Hydrocarbon Receptor Suppresses Sensitization in a Mouse Peanut Allergy Model

(2011) V. J. Schulz et al.   TOXICOLOGICAL SCIENCES

Clinical trial: randomized study of clarithromycin versus placebo in active Crohn’s disease

(2010) K. LEIPER et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Animal Protein Intake and Risk of Inflammatory Bowel Disease: The E3N Prospective Study

(2010) Prévost Jantchou et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Newly Developed Antibiotic Combination Therapy for Ulcerative Colitis: A Double-Blind Placebo-Controlled Multicenter Trial

(2010) Toshifumi Ohkusa et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Propensity to high-fat diet-induced obesity in rats is associated with changes in the gut microbiota and gut inflammation

(2010) Claire Barbier de La Serre et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Aberrant Interaction of the Gut Immune System with Environmental Factors in the Development of Food Allergies

(2010) Jun Kunisawa et al.   CURRENT ALLERGY AND ASTHMA REPORTS

Neonatal tolerance under breastfeeding influence

(2010) Valérie Verhasselt   CURRENT OPINION IN IMMUNOLOGY

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

US prevalence of self-reported peanut, tree nut, and sesame allergy: 11-year follow-up

(2010) Scott H. Sicherer et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Intestinal Bacteroides species associated with coeliac disease

(2010) E. Sanchez et al.   JOURNAL OF CLINICAL PATHOLOGY

Lactobacillus plantarum lipoteichoic acid down-regulated Shigella flexneri peptidoglycan-induced inflammation

(2010) Han Geun Kim et al.   MOLECULAR IMMUNOLOGY

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Early life: gut microbiota and immune development in infancy

(2010) R. Martin et al.   Beneficial Microbes

Establishment of the gut microbiota in Western infants

(2009) I Adlerberth et al.   ACTA PAEDIATRICA

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

The role of pH in determining the species composition of the human colonic microbiota

(2009) Sylvia H. Duncan et al.   ENVIRONMENTAL MICROBIOLOGY

Characteristics of childhood peanut allergy in the Australian Capital Territory, 1995 to 2007

(2009) Raymond James Mullins et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43

(2009) Kendle M. Maslowski et al.   NATURE

Food Allergy: Recent Advances in Pathophysiology and Treatment

(2009) Julie Wang et al.   Allergy Asthma & Immunology Research

Imbalances in faecal and duodenal Bifidobacterium species composition in active and non-active coeliac disease

(2008) Maria Collado et al.   BMC MICROBIOLOGY

Epidemiology of inflammatory bowel disease in a German twin cohort: Results of a nationwide study

(2008) Martina E. Spehlmann et al.   INFLAMMATORY BOWEL DISEASES

Specific duodenal and faecal bacterial groups associated with paediatric coeliac disease

(2008) M C Collado et al.   JOURNAL OF CLINICAL PATHOLOGY

Breast milk–mediated transfer of an antigen induces tolerance and protection from allergic asthma

(2008) Valérie Verhasselt et al.   NATURE MEDICINE

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY