Detecting ancient positive selection in humans using extended lineage sorting

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans

(2016) Sriram Sankararaman et al.   CURRENT BIOLOGY

Natural Selection in the Great Apes

(2016) Alexander Cagan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals

(2016) B. Vernot et al.   SCIENCE

The Ensembl gene annotation system

(2016) Bronwen L. Aken et al.   Database-The Journal of Biological Databases and Curation

Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation

(2015) F. Racimo   GENETICS

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

Extreme selective sweeps independently targeted the X chromosomes of the great apes

(2015) Kiwoong Nam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence

(2015) Julien Y. Dutheil et al.   PLoS Genetics

The Human Condition—A Molecular Approach

(2014) Svante Pääbo   CELL

The Projection of a Test Genome onto a Reference Population and Applications to Humans and Archaic Hominins

(2014) Melinda A. Yang et al.   GENETICS

Genome-wide signals of positive selection in human evolution

(2014) D. Enard et al.   GENOME RESEARCH

Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners

(2014) Rui Wang et al.   JOURNAL OF COMPARATIVE NEUROLOGY

A Test for Ancient Selective Sweeps and an Application to Candidate Sites in Modern Humans

(2014) Fernando Racimo et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Resurrecting Surviving Neandertal Lineages from Modern Human Genomes

(2014) B. Vernot et al.   SCIENCE

Common variation near ROBO2 is associated with expressive vocabulary in infancy

(2014) Beate St Pourcain et al.   Nature Communications

The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

(2014) Yann Lesecque et al.   PLoS Genetics

Genome-Wide Inference of Ancestral Recombination Graphs

(2014) Matthew D. Rasmussen et al.   PLoS Genetics

SLiM: Simulating Evolution with Selection and Linkage

(2013) Philipp W. Messer   GENETICS

A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

(2013) K. Munch et al.   GENOME RESEARCH

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

(2013) Marc Pybus et al.   NUCLEIC ACIDS RESEARCH

Insights into hominid evolution from the gorilla genome sequence

(2012) Aylwyn Scally et al.   NATURE

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

The Date of Interbreeding between Neandertals and Modern Humans

(2012) Sriram Sankararaman et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Comparative and demographic analysis of orang-utan genomes

(2011) Devin P. Locke et al.   NATURE

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The landscape of recombination in African Americans

(2011) Anjali G. Hinch et al.   NATURE

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

Decreased expression of axon-guidance receptors in the anterior cingulate cortex in autism

(2011) Shiro Suda et al.   Molecular Autism

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

Fine-scale recombination rate differences between sexes, populations and individuals

(2010) Augustine Kong et al.   NATURE

How culture shaped the human genome: bringing genetics and the human sciences together

(2010) Kevin N. Laland et al.   NATURE REVIEWS GENETICS

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The meaning of Neandertal skeletal morphology

(2009) T. D. Weaver   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Genomic Signatures of Natural Selection in Hominid Evolution

(2009) Graham McVicker et al.   PLoS Genetics

Human uniqueness: genome interactions with environment, behaviour and culture

(2008) Ajit Varki et al.   NATURE REVIEWS GENETICS

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics