Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements
出版年份 2017 全文链接
标题
Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements
作者
关键词
-
出版物
Genome Biology and Evolution
Volume 9, Issue 9, Pages 2308-2321
出版商
Oxford University Press (OUP)
发表日期
2017-08-26
DOI
10.1093/gbe/evx168
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Contentious relationships in phylogenomic studies can be driven by a handful of genes
- (2017) Xing-Xing Shen et al. Nature Ecology & Evolution
- The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
- (2016) James E. Tarver et al. Genome Biology and Evolution
- The phylogenomic forest of bird trees contains a hard polytomy at the root of Neoaves
- (2016) Alexander Suh ZOOLOGICA SCRIPTA
- Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates
- (2016) V. C. Mason et al. Science Advances
- ExaML version 3: a tool for phylogenomic analyses on supercomputers
- (2015) Alexey M. Kozlov et al. BIOINFORMATICS
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- PHYLUCE is a software package for the analysis of conserved genomic loci
- (2015) Brant C. Faircloth BIOINFORMATICS
- ASTRID: Accurate Species TRees from Internode Distances
- (2015) Pranjal Vachaspati et al. BMC GENOMICS
- Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
- (2015) Julia Chifman et al. JOURNAL OF THEORETICAL BIOLOGY
- Applying species-tree analyses to deep phylogenetic histories: Challenges and potential suggested from a survey of empirical phylogenetic studies
- (2015) Hayley C. Lanier et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews
- (2015) Thomas C. Giarla et al. SYSTEMATIC BIOLOGY
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
- (2014) John Gatesy et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Making the Impossible Possible: Rooting the Tree of Placental Mammals
- (2013) E. C. Teeling et al. MOLECULAR BIOLOGY AND EVOLUTION
- Heterogeneous Models Place the Root of the Placental Mammal Phylogeny
- (2013) Claire C. Morgan et al. MOLECULAR BIOLOGY AND EVOLUTION
- Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
- (2013) Jonathan Romiguier et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- How low can you go? The effects of mutation rate on the accuracy of species-tree estimation
- (2013) Hayley C. Lanier et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals
- (2013) M. A. O'Leary et al. SCIENCE
- The tree shrew provides a useful alternative model for the study of influenza H1N1 virus
- (2013) Zi-feng Yang et al. Virology Journal
- Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
- (2012) N. Rohland et al. GENOME RESEARCH
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
- (2012) M. dos Reis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
- (2011) J. E. McCormack et al. GENOME RESEARCH
- Molecular phylogeny of treeshrews (Mammalia: Scandentia) and the timescale of diversification in Southeast Asia
- (2011) Trina E. Roberts et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Quartet MaxCut: A fast algorithm for amalgamating quartet trees
- (2011) Sagi Snir et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
- (2011) R. W. Meredith et al. SCIENCE
- Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals
- (2011) Xuming Zhou et al. SYSTEMATIC BIOLOGY
- Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
- (2011) Hervé Philippe et al. PLOS BIOLOGY
- A Molecular Phylogeny of Living Primates
- (2011) Polina Perelman et al. PLoS Genetics
- DendroPy: a Python library for phylogenetic computing
- (2010) J. Sukumaran et al. BIOINFORMATICS
- How Many Bootstrap Replicates Are Necessary?
- (2010) Nicholas D. Pattengale et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Mammalian Evolution May not Be Strictly Bifurcating
- (2010) B. M. Hallstrom et al. MOLECULAR BIOLOGY AND EVOLUTION
- Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini
- (2009) Stephan Koblmüller et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
- (2008) T.-K. Seo MOLECULAR BIOLOGY AND EVOLUTION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started