Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide

(2016) Michiro Tabata et al.   DNA RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

(2014) Helianthous Verma et al.   BMC GENOMICS

Processing faecal samples: a step forward for standards in microbial community analysis

(2014) Alba Santiago et al.   BMC MICROBIOLOGY

Pesticide occurrence in groundwater and the physical characteristics in association with these detections in Ireland

(2014) Sarah-Louise McManus et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Bacterial Genome Instability

(2014) E. Darmon et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Novel Insight into the Genetic Context of the cadAB Genes from a 4-chloro-2-methylphenoxyacetic Acid-Degrading Sphingomonas

(2014) Tue Kjærgaard Nielsen et al.   PLoS One

Hundreds of Circular Novel Plasmids and DNA Elements Identified in a Rat Cecum Metamobilome

(2014) Tue Sparholt Jørgensen et al.   PLoS One

Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities

(2013) Frank O. Aylward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consumers of 4-chloro-2-methylphenoxyacetic acid from agricultural soil and drilosphere harborcadA,r/sdpA, andtfdA-like gene encoding oxygenases

(2013) Ya-Jun Liu et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogeny and organization of recombinase in trio (RIT) elements

(2013) N. Ricker et al.   PLASMID

Comparing Metabolic Functionalities, Community Structures, and Dynamics of Herbicide-Degrading Communities Cultivated with Different Substrate Concentrations

(2012) Erkin Gözdereliler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Broad-Host-Range Plasmids from Agricultural Soils Have IncP-1 Backbones with Diverse Accessory Genes

(2011) Diya Sen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

(R,S)-dichlorprop herbicide in agricultural soil induces proliferation and expression of multiple dioxygenase-encoding genes in the indigenous microbial community

(2011) Mélanie M. Paulin et al.   ENVIRONMENTAL MICROBIOLOGY

The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway

(2011) Shelley D. Copley et al.   Genome Biology and Evolution

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

(2011) Alessandro M Varani et al.   GENOME BIOLOGY

Structural Characterization of ISCR8, ISCR22, and ISCR23, Subgroups of IS91-Like Insertion Elements

(2010) K. M. Schleinitz et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Abundance and Expression of Enantioselective rdpA and sdpA Dioxygenase Genes during Degradation of the Racemic Herbicide (R,S)-2-(2,4-Dichlorophenoxy)Propionate in Soil

(2010) M. M. Paulin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Declining Capacity of StarvingDelftia acidovoransMC1 to Degrade Phenoxypropionate Herbicides Correlates with Oxidative Modification of the Initial Enzyme

(2010) Sabine Leibeling et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Conditions for the Evolution of Gene Clusters in Bacterial Genomes

(2010) Sara Ballouz et al.   PLoS Computational Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Analysis of genes encoding the 2,4-dichlorophenoxyacetic acid-degrading enzyme from Sphingomonas agrestis 58-1

(2009) Mitsuhiro Shimojo et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Molecular characteristics of xenobiotic-degrading sphingomonads

(2008) Andreas Stolz   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY