Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale
出版年份 2017 全文链接
标题
Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale
作者
关键词
-
出版物
Genome Biology and Evolution
Volume 9, Issue 10, Pages 2752-2763
出版商
Oxford University Press (OUP)
发表日期
2017-09-25
DOI
10.1093/gbe/evx198
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
- (2017) Liping Zeng et al. NEW PHYTOLOGIST
- The ancestral flower of angiosperms and its early diversification
- (2017) Hervé Sauquet et al. Nature Communications
- Estimating the number and assignment of clock models in analyses of multigene datasets
- (2016) Sebastián Duchêne et al. BIOINFORMATICS
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Evolutionary timescale of monocots determined by the fossilized birth-death model using a large number of fossil records
- (2016) Satoshi Eguchi et al. EVOLUTION
- Advances in Time Estimation Methods for Molecular Data
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
- (2016) Olga Chernomor et al. SYSTEMATIC BIOLOGY
- Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms)
- (2015) Julien Massoni et al. BMC EVOLUTIONARY BIOLOGY
- Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations
- (2015) David A. Duchêne et al. MOLECULAR BIOLOGY AND EVOLUTION
- A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
- (2015) Susana Magallón et al. NEW PHYTOLOGIST
- Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms
- (2015) Jeremy M. Beaulieu et al. SYSTEMATIC BIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular-clock methods for estimating evolutionary rates and timescales
- (2014) Simon Y. W. Ho et al. MOLECULAR ECOLOGY
- Using multiple relaxed-clock models to estimate evolutionary timescales from DNA sequence data
- (2014) Sebastián Duchêne et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylotranscriptomic analysis of the origin and early diversification of land plants
- (2014) Norman J. Wickett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci
- (2014) Tianqi Zhu et al. SYSTEMATIC BIOLOGY
- The changing face of the molecular evolutionary clock
- (2014) Simon Y.W. Ho TRENDS IN ECOLOGY & EVOLUTION
- Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times
- (2014) Liping Zeng et al. Nature Communications
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis
- (2013) Sebastián Duchêne et al. BIOINFORMATICS
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Taller plants have lower rates of molecular evolution
- (2013) Robert Lanfear et al. Nature Communications
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
- (2012) M. dos Reis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- The unbearable uncertainty of Bayesian divergence time estimation
- (2012) Mario DOS REIS et al. Journal of Systematics and Evolution
- Angiosperm phylogeny: 17 genes, 640 taxa
- (2011) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates
- (2011) Brandon Gaut et al. Annual Review of Ecology Evolution and Systematics
- Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
- (2011) M. d. Reis et al. MOLECULAR BIOLOGY AND EVOLUTION
- Establishing a time-scale for plant evolution
- (2011) John T. Clarke et al. NEW PHYTOLOGIST
- Recent Synchronous Radiation of a Living Fossil
- (2011) N. S. Nagalingum et al. SCIENCE
- Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)
- (2011) Hervé Sauquet et al. SYSTEMATIC BIOLOGY
- The age and diversification of the angiosperms re-revisited
- (2010) Charles D. Bell et al. AMERICAN JOURNAL OF BOTANY
- Fossil Record and Age of the Asteridae
- (2010) Marcela Martínez-Millán BOTANICAL REVIEW
- Tropidogyne, a New Genus of Early Cretaceous Eudicots (Angiospermae) from Burmese Amber
- (2010) Kenton L. Chambers et al. NOVON
- An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
- (2010) S. A. Smith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
- (2010) M. J. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms
- (2010) Susana Magallón SYSTEMATIC BIOLOGY
- Relaxed Molecular Clocks, the Bias–Variance Trade-off, and the Quality of Phylogenetic Inference
- (2009) Joel O. Wertheim et al. SYSTEMATIC BIOLOGY
- Angiosperm diversification through time
- (2008) Susana Magallón et al. AMERICAN JOURNAL OF BOTANY
- Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
- (2008) S. A. Smith et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started