Fitness change in relation to mutation number in spontaneous mutation accumulation lines of Chlamydomonas reinhardtii

The Phenotypic Effects of Spontaneous Mutations in Different Environments

(2015) Leigh C. Latta et al.   AMERICAN NATURALIST

Extensive de novo mutation rate variation between individuals and across the genome ofChlamydomonas reinhardtii

(2015) Rob W. Ness et al.   GENOME RESEARCH

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Direct Estimate of the Spontaneous Mutation Rate Uncovers the Effects of Drift and Recombination in theChlamydomonas reinhardtiiPlastid Genome

(2015) Rob W. Ness et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green AlgaChlamydomonas reinhardtii

(2015) Jonathan M. Flowers et al.   PLANT CELL

Repeatability of adaptation in experimental populations of different sizes

(2015) J. Lachapelle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Costs of CRISPR-Cas-mediated resistance inStreptococcus thermophilus

(2015) Pedro F. Vale et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SPONTANEOUS MUTATION ACCUMULATION IN MULTIPLE STRAINS OF THE GREEN ALGA,CHLAMYDOMONAS REINHARDTII

(2014) Andrew D. Morgan et al.   EVOLUTION

Selection of a Multidrug Resistance Plasmid by Sublethal Levels of Antibiotics and Heavy Metals

(2014) E. Gullberg et al.   mBio

Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population

(2014) Susan F. Bailey et al.   Nature Communications

A Comparison of Models to Infer the Distribution of Fitness Effects of New Mutations

(2013) A. Kousathanas et al.   GENETICS

Growth Rates Made Easy

(2013) B. G. Hall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Expanding the spectral palette of fluorescent proteins for the green microalgaChlamydomonas reinhardtii

(2013) Beth A. Rasala et al.   PLANT JOURNAL

THE MAINTENANCE OF OBLIGATE SEX IN FINITE, STRUCTURED POPULATIONS SUBJECT TO RECURRENT BENEFICIAL AND DELETERIOUS MUTATION

(2012) Matthew Hartfield et al.   EVOLUTION

Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes

(2012) Dee R. Denver et al.   Genome Biology and Evolution

On measuring selection in experimental evolution

(2010) L.-M. Chevin   Biology Letters

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?

(2010) P. D. Keightley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Evolutionary Enigma of Sex

(2009) Sarah P. Otto   AMERICAN NATURALIST

Spontaneous Mutation Accumulation Studies in Evolutionary Genetics

(2009) Daniel L. Halligan et al.   Annual Review of Ecology Evolution and Systematics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The effect of pathogens on selection against deleterious mutations inDrosophila melanogaster

(2009) JADENE A. YOUNG et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Interactions Between Stressful Environment and Gene Deletions Alleviate the Expected Average Loss of Fitness in Yeast

(2008) L. Jasnos et al.   GENETICS