How consistent are we? Interlaboratory comparison study in fathead minnows using the model estrogen 17α-ethinylestradiol to develop recommendations for environmental transcriptomics

Ecotoxicogenomics: Microarray interlaboratory comparability

(2016) Doris E. Vidal-Dorsch et al.   CHEMOSPHERE

The influence of breeding strategy, reproductive stage, and tissue type on transcript variability in fish

(2016) David A. Dreier et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Removing Batch Effects from Longitudinal Gene Expression - Quantile Normalization Plus ComBat as Best Approach for Microarray Transcriptome Data

(2016) Christian Müller et al.   PLoS One

From single chemicals to mixtures—Reproductive effects of levonorgestrel and ethinylestradiol on the fathead minnow

(2015) Tamsin J. Runnalls et al.   AQUATIC TOXICOLOGY

Defining the role of omics in assessing ecosystem health: Perspectives from the Canadian environmental monitoring program

(2015) Paulina A. Bahamonde et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Microarray applications to understand the impact of exposure to environmental contaminants in wild dolphins (Tursiops truncatus)

(2015) Annalaura Mancia et al.   Marine Genomics

Fold change rank ordering statistics: a new method for detecting differentially expressed genes

(2014) Doulaye Dembélé et al.   BMC BIOINFORMATICS

Differential Effects and Potential Adverse Outcomes of Ionic Silver and Silver Nanoparticles in Vivo and in Vitro

(2014) Natàlia Garcia-Reyero et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio)

(2014) Rong-Lin Wang et al.   PLoS One

The effects of 17-α-ethinylestradiol (EE2) on molecular signaling cascades in mummichog (Fundulus heteroclitus)

(2013) M.A. Doyle et al.   AQUATIC TOXICOLOGY

Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis

(2013) Lifang Zhang et al.   BMC BIOINFORMATICS

An inter-laboratory study on the variability in measured concentrations of 17β-estradiol, testosterone, and 11-ketotestosterone in white sucker: Implications and recommendations

(2013) April Feswick et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Fold change and p-value cutoffs significantly alter microarray interpretations

(2012) Mark R Dalman et al.   BMC BIOINFORMATICS

The Comparative Toxicogenomics Database: update 2013

(2012) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

The occurrence of steroidal estrogens in south-eastern Ontario wastewater treatment plants

(2012) Susanna K. Atkinson et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Seasonal reproductive patterns and recommended sampling times for sentinel fish species used in environmental effects monitoring programs in Canada

(2011) Timothy J. Barrett et al.   ENVIRONMENTAL REVIEWS

Inter- and intra-laboratory study to determine the reproducibility of toxicogenomics datasets

(2011) D.J. Scott et al.   TOXICOLOGY

Environmentally relevant exposure to 17α-ethinylestradiol affects the telencephalic proteome of male fathead minnows

(2010) Christopher J. Martyniuk et al.   AQUATIC TOXICOLOGY

Promise and progress in environmental genomics: a status report on the applications of gene expression-based microarray studies in ecologically relevant fish species

(2010) S. E. Hook   JOURNAL OF FISH BIOLOGY

Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling

(2009) Liraz Levi et al.   BMC GENOMICS

A REVIEW OF POTENTIAL METHODS OF DETERMINING CRITICAL EFFECT SIZE FOR DESIGNING ENVIRONMENTAL MONITORING PROGRAMS

(2009) Kelly R. Munkittrick et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene

(2009) Sarah L. Hockley et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

17α-ETHINYLESTRADIOL ALTERS REPRODUCTIVE BEHAVIORS, CIRCULATING HORMONES, AND SEXUAL MORPHOLOGY IN MALE FATHEAD MINNOWS (PIMEPHALES PROMELAS)

(2008) James D. Salierno et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY