Temperature drives the assembly of endophytic communities' seasonal succession

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Seasonal Community Succession of the Phyllosphere Microbiome

(2015) Julia K. Copeland et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

(2015) Davide Albanese et al.   Scientific Reports

Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir

(2015) Sarah Knight et al.   Scientific Reports

Tree genotype and genetically based growth traits structure twig endophyte communities

(2014) Louis J. Lamit et al.   AMERICAN JOURNAL OF BOTANY

Diversity in Endophyte Populations Reveals Functional and Taxonomic Diversity between Wild and Domesticated Grapevines

(2014) Andrea Campisano et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Impact of swapping soils on the endophytic bacterial communities of pre-domesticated, ancient and modern maize

(2014) David Johnston-Monje et al.   BMC PLANT BIOLOGY

Pyrosequencing reveals regional differences in fruit-associated fungal communities

(2014) Michael W. Taylor et al.   ENVIRONMENTAL MICROBIOLOGY

The Growth of Steroidobacter agariperforans sp. nov., a Novel Agar-Degrading Bacterium Isolated from Soil, is Enhanced by the Diffusible Metabolites Produced by Bacteria Belonging to Rhizobiales

(2014) Masao Sakai et al.   MICROBES AND ENVIRONMENTS

Moderate Warming in Microcosm Experiment Does Not Affect Microbial Communities in Temperate Vineyard Soils

(2014) Paola Elisa Corneo et al.   MICROBIAL ECOLOGY

Interkingdom Transfer of the Acne-Causing Agent, Propionibacterium acnes, from Human to Grapevine

(2014) Andrea Campisano et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns

(2014) Aurore Coince et al.   PLoS One

Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region

(2014) Annamaria Bevivino et al.   PLoS One

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management

(2014) Andrea Campisano et al.   PLoS One

Characterization of rhizosphere and endophytic bacterial communities from leaves, stems and roots of medicinal Stellera chamaejasme L.

(2014) Hui Jin et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Culturable endophytic microbial communities in the circumpolar grass,Deschampsia flexuosain a sub-Arctic inland primary succession are habitat and growth stage specific

(2014) Anbu Poosakkannu et al.   Environmental Microbiology Reports

Vertical transmission of fungal endophytes is widespread in forbs

(2014) Susan Hodgson et al.   Ecology and Evolution

Pyrosequencing detects human and animal pathogenic taxa in the grapevine endosphere

(2014) Sohail Yousaf et al.   Frontiers in Microbiology

The impact of the pathogen Rhizoctonia solani and its beneficial counterpart Bacillus amyloliquefaciens on the indigenous lettuce microbiome

(2014) Armin Erlacher et al.   Frontiers in Microbiology

Predicting community and ecosystem outcomes of mycorrhizal responses to global change

(2013) Nancy C. Johnson et al.   ECOLOGY LETTERS

Microbial community structure in vineyard soils across altitudinal gradients and in different seasons

(2013) Paola E. Corneo et al.   FEMS MICROBIOLOGY ECOLOGY

Soil microbial responses to warming and increased precipitation and their implications for ecosystem C cycling

(2013) Naili Zhang et al.   OECOLOGIA

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments

(2013) Ramona Marasco et al.   Biomed Research International

Plant tolerance to high temperature in a changing environment: scientific fundamentals and production of heat stress-tolerant crops

(2013) Craita E. Bita et al.   Frontiers in Plant Science

Endophytic bacterial community living in roots of healthy and ‘Candidatus Phytoplasma mali’-infected apple (Malus domestica, Borkh.) trees

(2012) Daniela Bulgari et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Fungal Endophytic Communities in Grapevines (Vitis vinifera L.) Respond to Crop Management

(2012) Michael Pancher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing

(2012) Melanie Kuffner et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

(2012) N. B. Zimmerman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

From Structure to Function: the Ecology of Host-Associated Microbial Communities

(2010) C. J. Robinson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: from the rhizosphere to inflorescence tissues

(2009) Stéphane Compant et al.   FEMS MICROBIOLOGY ECOLOGY

The structure of the culturable root bacterial endophyte community of Nicotiana attenuata is organized by soil composition and host plant ethylene production and perception

(2009) Hoang Hoa Long et al.   NEW PHYTOLOGIST

Microbial services: challenges for microbial ecologists in a changing world

(2008) H Ducklow   AQUATIC MICROBIAL ECOLOGY