Toward the Geoscience Paper of the Future: Best practices for documenting and sharing research from data to software to provenance

Ecological data sharing

(2015) William K. Michener   Ecological Informatics

Clarifying the terminology that describes scientific reproducibility

(2015) Ron S Kenett et al.   NATURE METHODS

Open science decoded

(2015) Tony Hey et al.   Nature Physics

It's Good to Share: Why Environmental Scientists’ Ethics Are Out of Date

(2014) Patricia A. Soranno et al.   BIOSCIENCE

Biomedical research: increasing value, reducing waste

(2014) Malcolm R Macleod et al.   LANCET

Interactive notebooks: Sharing the code

(2014) Helen Shen   NATURE

Journals unite for reproducibility

(2014)   NATURE

Code share

(2014)   NATURE

Metascience could rescue the ‘replication crisis’

(2014) Jonathan W. Schooler   NATURE

Policy: NIH plans to enhance reproducibility

(2014) Francis S. Collins et al.   NATURE

Open code for open science?

(2014) Steve M. Easterbrook   Nature Geoscience

Of carrots and sticks

(2014) Jens Kattge et al.   Nature Geoscience

Towards transparency

(2014)   Nature Geoscience

Scholarly Context Not Found: One in Five Articles Suffers from Reference Rot

(2014) Martin Klein et al.   PLoS One

Journals unite for reproducibility

(2014) M. McNutt   SCIENCE

Ten Simple Rules for the Care and Feeding of Scientific Data

(2014) Alyssa Goodman et al.   PLoS Computational Biology

How to Make More Published Research True

(2014) John P. A. Ioannidis   PLOS MEDICINE

Open Access Data in Polar and Cryospheric Remote Sensing

(2014) Allen Pope et al.   Remote Sensing

The Availability of Research Data Declines Rapidly with Article Age

(2013) Timothy H. Vines et al.   CURRENT BIOLOGY

Data-sharing: Everything on display

(2013) Richard Van Noorden   NATURE

If a job is worth doing, it is worth doing twice

(2013) Jonathan F. Russell   NATURE

Announcement: Reducing our irreproducibility

(2013)   NATURE

Toward Reproducible Computational Research: An Empirical Analysis of Data and Code Policy Adoption by Journals

(2013) Victoria Stodden et al.   PLoS One

Making Research Data Repositories Visible: The re3data.org Registry

(2013) Heinz Pampel et al.   PLoS One

Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome

(2013) Daniel Garijo et al.   PLoS One

Scholarly Communication: Cultural Contexts, Evolving Models

(2013) Diane Harley   SCIENCE

Biodiversity data should be published, cited, and peer reviewed

(2013) Mark J. Costello et al.   TRENDS IN ECOLOGY & EVOLUTION

On the reproducibility of science: unique identification of research resources in the biomedical literature

(2013) Nicole A. Vasilevsky et al.   PeerJ

Gaining wisdom from crowds

(2012) Neil Savage   COMMUNICATIONS OF THE ACM

A component-based approach to integrated modeling in the geosciences: The design of CSDMS

(2012) Scott D. Peckham et al.   COMPUTERS & GEOSCIENCES

Reproducible research for scientific computing: Tools and strategies for changing the culture

(2012) Randall J. LeVeque et al.   COMPUTING IN SCIENCE & ENGINEERING

Replication studies: Bad copy

(2012) Ed Yong   NATURE

Error prone

(2012)   NATURE

Must try harder

(2012)   NATURE

The case for open computer programs

(2012) Darrel C. Ince et al.   NATURE

Raise standards for preclinical cancer research

(2012) C. Glenn Begley et al.   NATURE

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

(2012) Anton Nekrutenko et al.   NATURE REVIEWS GENETICS

Discovery of Western European R1b1a2 Y Chromosome Variants in 1000 Genomes Project Data: An Online Community Approach

(2012) Richard A. Rocca et al.   PLoS One

Case studies in reproducibility

(2011) T. Hothorn et al.   BRIEFINGS IN BIOINFORMATICS

An Overview of CMIP5 and the Experiment Design

(2011) Karl E. Taylor et al.   BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY

What Information Should Be Required to Support Clinical "Omics" Publications?

(2011) K. A. Baggerly et al.   CLINICAL CHEMISTRY

Retracted Science and the Retraction Index

(2011) Ferric C. Fang et al.   INFECTION AND IMMUNITY

Planet Hunters: the first two planet candidates identified by the public using the Kepler public archive data★

(2011) Debra A. Fischer et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Open science is a research accelerator

(2011) Michael Woelfle et al.   Nature Chemistry

Believe it or not: how much can we rely on published data on potential drug targets?

(2011) Florian Prinz et al.   NATURE REVIEWS DRUG DISCOVERY

Crystal structure of a monomeric retroviral protease solved by protein folding game players

(2011) Firas Khatib et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Data Sharing by Scientists: Practices and Perceptions

(2011) Carol Tenopir et al.   PLoS One

Replication in Field Biology: The Case of the Frog-Eating Bat

(2011) M. J. Ryan   SCIENCE

Again, and Again, and Again ...

(2011) B. R. Jasny et al.   SCIENCE

The Reproducibility of Observational Estimates of Surface and Atmospheric Temperature Change

(2011) B. D. Santer et al.   SCIENCE

Challenges and Opportunities of Open Data in Ecology

(2011) O. J. Reichman et al.   SCIENCE

Repeatability and workability evaluation of SIGMOD 2011

(2011) Philippe Bonnet et al.   SIGMOD RECORD

Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology

(2010) Keith A. Baggerly et al.   Annals of Applied Statistics

Open Data and the Social Contract of Scientific Publishing

(2010) Todd J. Vision   BIOSCIENCE

Transparency and reproducibility in data analysis: the Prostate Cancer Prevention Trial

(2010) S. G. Baker et al.   BIOSTATISTICS

An invitation to reproducible computational research

(2010) D. L. Donoho   BIOSTATISTICS

Repeatability and transparency in ecological research

(2010) Aaron M. Ellison   ECOLOGY

The Open Provenance Model core specification (v1.1)

(2010) Luc Moreau et al.   Future Generation Computer Systems-The International Journal of eScience

Galaxy Zoo 1: data release of morphological classifications for nearly 900 000 galaxies★

(2010) Chris Lintott et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Publish your computer code: it is good enough

(2010) Nick Barnes   NATURE

Accessible Reproducible Research

(2010) J. P. Mesirov   SCIENCE

What Do I Want from the Publisher of the Future?

(2010) Philip E. Bourne   PLoS Computational Biology

Reproducible research and Biostatistics

(2009) Roger D. Peng   BIOSTATISTICS

Repeatability of published microarray gene expression analyses

(2009) John P A Ioannidis et al.   NATURE GENETICS

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

Empirical Study of Data Sharing by Authors Publishing in PLoS Journals

(2009) Caroline J. Savage et al.   PLoS One

Public sharing of research datasets: A pilot study of associations

(2009) Heather A. Piwowar et al.   Journal of Informetrics

Caching code chunks in dynamic documents

(2008) Seth Falcon   COMPUTATIONAL STATISTICS

The Legal Framework for Reproducible Scientific Research: Licensing and Copyright

(2008) Victoria Stodden   COMPUTING IN SCIENCE & ENGINEERING

Reproducible Research in Computational Harmonic Analysis

(2008) David L. Donoho et al.   COMPUTING IN SCIENCE & ENGINEERING

The design and realisation of the Virtual Research Environment for social sharing of workflows

(2008) David De Roure et al.   Future Generation Computer Systems-The International Journal of eScience

The repeatability experiment of SIGMOD 2008

(2008) I. Manolescu et al.   SIGMOD RECORD

Special Issue: The First Provenance Challenge

(2007) Luc Moreau et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE