Molecular Properties of Globin Channels and Pores: Role of Cholesterol in Ligand Binding and Movement

A mirror code for protein-cholesterol interactions in the two leaflets of biological membranes

(2016) Jacques Fantini et al.   Scientific Reports

The influence of cholesterol on membrane protein structure, function, and dynamics studied by molecular dynamics simulations

(2015) Julie Grouleff et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

CCTOP: a Consensus Constrained TOPology prediction web server

(2015) László Dobson et al.   NUCLEIC ACIDS RESEARCH

Cholesterol Interaction with the MAGUK Protein Family Member, MPP1, via CRAC and CRAC-Like Motifs: An In Silico Docking Analysis

(2015) Marcin A. Listowski et al.   PLoS One

Function and evolution of vertebrate globins

(2014) T. Burmester et al.   Acta Physiologica

Why isn't endogenous ouabain more widely accepted?

(2014) Mordecai P. Blaustein   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

The pore-lining regions in cytochrome c oxidases: A computational analysis of caveolin, cholesterol and transmembrane helix contributions to proton movement

(2014) Gene A. Morrill et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Structural alterations of hemoglobin and myoglobin by glyoxal: A comparative study

(2014) Sauradipta Banerjee et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity

(2014) Teresa Paramo et al.   Journal of Chemical Theory and Computation

Membrane pore formation at protein–lipid interfaces

(2014) Robert J.C. Gilbert et al.   TRENDS IN BIOCHEMICAL SCIENCES

Cholesterol binding to ion channels

(2014) Irena Levitan et al.   Frontiers in Physiology

GeneratingS-Nitrosothiols from Hemoglobin

(2013) Camille J. Roche et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of Novel Cholesterol-binding Regions in Kir2 Channels

(2013) Avia Rosenhouse-Dantsker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How cholesterol interacts with membrane proteins: an exploration of cholesterol-binding sites including CRAC, CARC, and tilted domains

(2013) Jacques Fantini et al.   Frontiers in Physiology

Detecting pore-lining regions in transmembrane protein sequences

(2012) Timothy Nugent et al.   BMC BIOINFORMATICS

Determination of Ligand Pathways in Globins

(2012) Mallory D. Salter et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cholesterol Modulates the Structure, Binding Modes, and Energetics of Caveolin–Membrane Interactions

(2012) Durba Sengupta   JOURNAL OF PHYSICAL CHEMISTRY B

Vertebrate protein glycosylation: diversity, synthesis and function

(2012) Kelley W. Moremen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The MEMPACK alpha-helical transmembrane protein structure prediction server

(2011) T. Nugent et al.   BIOINFORMATICS

TMKink: A method to predict transmembrane helix kinks

(2011) Alejandro D. Meruelo et al.   PROTEIN SCIENCE

Phase Separation in Lipid Membranes

(2011) F. A. Heberle et al.   Cold Spring Harbor Perspectives in Biology

Disclosure of cholesterol recognition motifs in transmembrane domains of the human nicotinic acetylcholine receptor

(2011) Carlos J. Baier et al.   Scientific Reports

Band 3 multiprotein complexes in the red cell membrane; of mice and men

(2010) Emile van den Akker et al.   BLOOD CELLS MOLECULES AND DISEASES

A Molecular View of the Cholesterol Condensing Effect in DOPC Lipid Bilayers

(2010) Mohammad Alwarawrah et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Lipid rafts as functional heterogeneity in cell membranes

(2009) Daniel Lingwood et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Pattern of cavities in globins: The case of human hemoglobin

(2009) Carmelinda Savino et al.   BIOPOLYMERS

Neurons express hemoglobin α- and β-chains in rat and human brains

(2009) Franziska Richter et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction

(2009) Spencer E. Hall et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin

(2009) Ayana Tomita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure

(2009) Marialuisa Pellegrini-Calace et al.   PLoS Computational Biology

Overcoming the challenges of membrane protein crystallography

(2008) Elisabeth P Carpenter et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Studying the folding of multidomain proteins

(2008) Sarah Batey et al.   HFSP Journal

Characterization of the deoxyhemoglobin binding site on human erythrocyte band 3: implications for O2 regulation of erythrocyte properties

(2007) H. Chu et al.   BLOOD

Rapid protein domain assignment from amino acid sequence using predicted secondary structure

(2002) Russell L. Marsden et al.   PROTEIN SCIENCE