Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root

Hormones and nitrate: a two-way connection

(2016) Gabriel Krouk   PLANT MOLECULAR BIOLOGY

Spatiotemporal Brassinosteroid Signaling and Antagonism with Auxin Pattern Stem Cell Dynamics in Arabidopsis Roots

(2015) Juthamas Chaiwanon et al.   CURRENT BIOLOGY

Plant hormone cross-talk: the pivot of root growth

(2015) Elena Pacifici et al.   JOURNAL OF EXPERIMENTAL BOTANY

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

(2015) Gabriel Krouk et al.   Molecular Plant

Inference of the Arabidopsis Lateral Root Gene Regulatory Network Suggests a Bifurcation Mechanism That Defines Primordia Flanking and Central Zones

(2015) Julien Lavenus et al.   PLANT CELL

Analysis of the Root System Architecture of Arabidopsis Provides a Quantitative Readout of Crosstalk between Nutritional Signals

(2014) F. Kellermeier et al.   PLANT CELL

Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family

(2014) D. Roppolo et al.   PLANT PHYSIOLOGY

A Spatial Accommodation by Neighboring Cells Is Required for Organ Initiation in Arabidopsis

(2014) J. E. M. Vermeer et al.   SCIENCE

A Mechanism for Localized Lignin Deposition in the Endodermis

(2013) Yuree Lee et al.   CELL

The AP2/EREBP Gene PUCHI Co-Acts with LBD16/ASL18 and LBD18/ASL20 Downstream of ARF7 and ARF19 to Regulate Lateral Root Development in Arabidopsis

(2013) Na Young Kang et al.   PLANT AND CELL PHYSIOLOGY

Plasticity of the Arabidopsis Root System under Nutrient Deficiencies

(2013) B. D. Gruber et al.   PLANT PHYSIOLOGY

RootScape: A Landmark-Based System for Rapid Screening of Root Architecture in Arabidopsis

(2013) D. Ristova et al.   PLANT PHYSIOLOGY

Transcriptome Responses to Combinations of Stresses in Arabidopsis

(2013) S. Rasmussen et al.   PLANT PHYSIOLOGY

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

(2013) M. Lucas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots

(2013) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LBD29 regulates the cell cycle progression in response to auxin during lateral root formation in Arabidopsis thaliana

(2012) Zhenhua Feng et al.   ANNALS OF BOTANY

LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration

(2012) Mingzhu Fan et al.   CELL RESEARCH

Localized Iron Supply Triggers Lateral Root Elongation in Arabidopsis by Altering the AUX1-Mediated Auxin Distribution

(2012) R. F. H. Giehl et al.   PLANT CELL

Hormonal control of nitrogen acquisition: roles of auxin, abscisic acid, and cytokinin

(2011) Takatoshi Kiba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrogen economics of root foraging: Transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand

(2011) S. Ruffel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HIGH NITROGEN INSENSITIVE 9 (HNI9)-mediated systemic repression of root NO3−uptake is associated with changes in histone methylation

(2011) Thomas Widiez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A framework integrating plant growth with hormones and nutrients

(2011) Gabriel Krouk et al.   TRENDS IN PLANT SCIENCE

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis

(2010) Mariana Obertello et al.   BMC Systems Biology

A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity

(2010) Bert De Rybel et al.   CURRENT BIOLOGY

Nitrate-Regulated Auxin Transport by NRT1.1 Defines a Mechanism for Nutrient Sensing in Plants

(2010) Gabriel Krouk et al.   DEVELOPMENTAL CELL

Hormonal control of the shoot stem-cell niche

(2010) Zhong Zhao et al.   NATURE

Ammonium Triggers Lateral Root Branching in Arabidopsis in an AMMONIUM TRANSPORTER1;3-Dependent Manner

(2010) J. E. Lima et al.   PLANT CELL

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The roots of a new green revolution

(2010) Griet Den Herder et al.   TRENDS IN PLANT SCIENCE

Auxin Control of Root Development

(2010) P. Overvoorde et al.   Cold Spring Harbor Perspectives in Biology

A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"

(2009) Damion Nero et al.   BMC Systems Biology

Ethylene is involved in nitrate-dependent root growth and branching in Arabidopsis thaliana

(2009) Qiu-Ying Tian et al.   NEW PHYTOLOGIST

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis

(2009) Gabriel Krouk et al.   PLoS Computational Biology

Plant hormones and nutrient signaling

(2008) Vicente Rubio et al.   PLANT MOLECULAR BIOLOGY

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE