Industrial Acetogenic Biocatalysts: A Comparative Metabolic and Genomic Analysis

Improved operating strategy for continuous fermentation of carbon monoxide to fuel-ethanol by clostridia

(2016) Haris Nalakath Abubackar et al.   APPLIED ENERGY

Low carbon fuels and commodity chemicals from waste gases – systematic approach to understand energy metabolism in a model acetogen

(2016) Esteban Marcellin et al.   GREEN CHEMISTRY

Acetone production with metabolically engineered strains of Acetobacterium woodii

(2016) Sabrina Hoffmeister et al.   METABOLIC ENGINEERING

Insights into CO 2 Fixation Pathway of Clostridium autoethanogenum by Targeted Mutagenesis

(2016) Fungmin Liew et al.   mBio

Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks

(2016) FungMin Liew et al.   Frontiers in Microbiology

Butanol and hexanol production in Clostridium carboxidivorans syngas fermentation: Medium development and culture techniques

(2015) John R. Phillips et al.   BIORESOURCE TECHNOLOGY

Traits of selectedClostridiumstrains for syngas fermentation to ethanol

(2015) Michael E. Martin et al.   BIOTECHNOLOGY AND BIOENGINEERING

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium

(2015) Christopher M. Humphreys et al.   BMC GENOMICS

C1-carbon sources for chemical and fuel production by microbial gas fermentation

(2015) Peter Dürre et al.   CURRENT OPINION IN BIOTECHNOLOGY

Energy Conservation Associated with Ethanol Formation from H2and CO2in Clostridium autoethanogenum Involving Electron Bifurcation

(2015) Johanna Mock et al.   JOURNAL OF BACTERIOLOGY

The Complete Genome Sequence of Clostridium aceticum : a Missing Link between Rnf- and Cytochrome-Containing Autotrophic Acetogens

(2015) Anja Poehlein et al.   mBio

Permanent draft genome sequence of Acidiphilium sp. JA12-A1

(2015) Sophie R. Ullrich et al.   Standards in Genomic Sciences

Pathways and Bioenergetics of Anaerobic Carbon Monoxide Fermentation

(2015) Martijn Diender et al.   Frontiers in Microbiology

Reconstruction of an Acetogenic 2,3-Butanediol Pathway Involving a Novel NADPH-Dependent Primary-Secondary Alcohol Dehydrogenase

(2014) Michael Köpke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lactose-Inducible System for Metabolic Engineering of Clostridium ljungdahlii

(2014) Areen Banerjee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

(2014) Steven D Brown et al.   Biotechnology for Biofuels

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Evidence for a Hexaheteromeric Methylenetetrahydrofolate Reductase in Moorella thermoacetica

(2014) J. Mock et al.   JOURNAL OF BACTERIOLOGY

Improved conversion efficiencies for n-fatty acid reduction to primary alcohols by the solventogenic acetogen “Clostridium ragsdalei”

(2014) Catherine E. Isom et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria

(2014) Kai Schuchmann et al.   NATURE REVIEWS MICROBIOLOGY

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Converting Carbon Dioxide to Butyrate with an Engineered Strain of Clostridium ljungdahlii

(2014) T. Ueki et al.   mBio

Bacterial synthesis gas (syngas) fermentation

(2013) Frank R. Bengelsdorf et al.   ENVIRONMENTAL TECHNOLOGY

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Genomic Evaluation of Thermoanaerobacter spp. for the Construction of Designer Co-Cultures to Improve Lignocellulosic Biofuel Production

(2013) Tobin J. Verbeke et al.   PLoS One

A Genetic System for Clostridium ljungdahlii: a Chassis for Autotrophic Production of Biocommodities and a Model Homoacetogen

(2012) Ching Leang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Commercial Biomass Syngas Fermentation

(2012) James Daniell et al.   Energies

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Fermentative production of ethanol from carbon monoxide

(2011) Michael Köpke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Construction and Characterization of a Lactose-Inducible Promoter System for Controlled Gene Expression inClostridium perfringens

(2010) Andrea H. Hartman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Clostridium ljungdahlii represents a microbial production platform based on syngas

(2010) M. Kopke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ClosTron: Mutagenesis in Clostridium refined and streamlined

(2009) John T. Heap et al.   JOURNAL OF MICROBIOLOGICAL METHODS

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS