4.6 Article

Soil pH is a Key Determinant of Soil Fungal Community Composition in the Ny-Alesund Region, Svalbard (High Arctic)

期刊

FRONTIERS IN MICROBIOLOGY
卷 7, 期 -, 页码 -

出版社

FRONTIERS MEDIA SA
DOI: 10.3389/fmicb.2016.00227

关键词

soil fungi; fungal community composition; arctic tundra; soil properties; high-throughput sequencing

资金

  1. National Infrastructure of Microbial Resources [NIMR-2015-3]
  2. National Natural Science Foundation of China (NSFC) [31170041, 81321004, 31300115]
  3. Polar Strategic Research Foundation of China [20120302]
  4. 863 Program [2014AA021504]
  5. Projects of the Chinese Arctic and Antarctic Administration
  6. State Oceanic Administration [2013YR06006, 2013YR05005]
  7. Xiehe Scholar

向作者/读者索取更多资源

This study assessed the fungal community composition and its relationships with properties of surface soils in the Ny-Alesund Region (Svalbard, High Arctic). A total of thirteen soil samples were collected and soil fungal community was analyzed by 454 pyrosequencing with fungi specific primers targeting the rDNA internal transcribed spacer (ITS) region. The following eight soil properties were analyzed: pH, organic carbon (C), organic nitrogen (N), ammonium nitrogen (NH4+-N), silicate silicon (SiO42--Si), nitrite nitrogen (NO2- -N), phosphate phosphorus (PO43- -P), and nitrate nitrogen (NO3--N). A total of 57,952 reads belonging to 541 operational taxonomic units (OTUs) were found, of these OTUs, 343 belonged to Ascomycota, 100 to Basidiomycota, 31 to Chytridiomycota, 22 to Glomeromycota, 11 to Zygomycota, 10 to Rozellomycota, whereas 24 belonged to unknown fungi. The dominant orders were Helotiales, Verrucariales, Agaricales, Lecanorales, Chaetothyriales, Lecideales, and Capnodiales. The common genera (> eight soil samples) were Tetracladium, Mortierella, Fusarium, Cortinarius, and Atla. Distance-based redundancy analysis (db-rda) and analysis of similarities (ANOSIM) revealed that soil pH (p = 0.001) was the most significant factor in determining the soil fungal community composition. Members of Verrucariales were found to predominate in soils of pH 8-9, whereas Sordariales predominated in soils of pH 7-8 and Coniochaetales predominated in soils of pH 6-7. The results suggest the presence and distribution of diverse soil fungal communities in the High Arctic, which can provide reliable data for studying the ecological responses of soil fungal communities to climate changes in the Arctic.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Microbiology

Isolation, Characterization, and Antimicrobial Activity of Bacterial and Fungal Representatives Associated With Particulate Matter During Haze and Non-haze Days

Dong Yan, Tao Zhang, Jing-Lin Bai, Jing Su, Li-Li Zhao, Hao Wang, Xiao-Mei Fang, Yu-Qin Zhang, Hong-Yu Liu, Li-Yan Yu

Summary: Particulate matter (PM) from the environment in metropolises can impact human health, and this study collected a wide range of bacterial and fungal isolates from PM samples. The researchers found variations in bacterial and fungal genera under different weather conditions, and identified several isolates with antimicrobial activities against common pathogens.

FRONTIERS IN MICROBIOLOGY (2022)

Editorial Material Microbiology

Editorial: A Focus on Actinobacteria: Diversity, Distribution, and Secondary Metabolites

Yu-Qin Zhang, Xin-Peng Tian, Louis S. Tisa, Imen Nouioui, Wen-Jun Li

FRONTIERS IN MICROBIOLOGY (2022)

Article Plant Sciences

Metabolites from the plant endophytic fungus Penicillium sp. CPCC 401423 and their cytotoxic activity against MIA PaCa-2 cells

Xu Pang, Guo-Wei Cai, Meng-Yan Wang, Xiu-Fei Chen, Wen-Ni He, Wu-Li Zhao, Tao Zhang, Li-Yan Yu

Summary: Twenty-two metabolites were isolated from Penicillium sp. CPCC 401423 cultured on rice and their structures were identified. Among them, nine compounds were identified as new. These compounds were tested for their cytotoxic activity against pancreatic carcinoma cells.

JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH (2023)

Article Biochemical Research Methods

Ac-LysargiNase efficiently helps genome reannotation of Mycolicibacterium smegmatis MC2 155

Huiming Zhu, Songhao Jiang, Wenjing Zhou, Hao Chi, Jinshuai Sun, Jiahui Shi, Zhenpeng Zhang, Lei Chang, Liyan Yu, Lixia Zhang, Zhitang Lyu, Ping Xu, Yao Zhang

Summary: Accurate genome annotation is crucial in life science research, but it is limited by known gene models and the homology of annotated genes in other organisms. This study discovered that Ac-LysargiNase can identify additional peptides and help with genome reannotation. The study also found that verified GSSPs corrected the TISs of annotated genes and identified novel ORFs missed in previous annotations.

JOURNAL OF PROTEOMICS (2022)

Article Chemistry, Organic

Prenylemestrins A and B: Two Unexpected Epipolythiodioxopiperazines with a Thioethanothio Bridge from Emericella sp. Isolated by Genomic Analysis

Shanshan Chang, Meilian Cai, Tongmei Xiao, Yuchuan Chen, Wuli Zhao, Liyan Yu, Rongguang Shao, Wei Jiang, Tao Zhang, Maoluo Gan, Shuyi Si, Minghua Chen

Summary: In this study, two unusual compounds, 1 and 2, were isolated from the fungus Emericella sp. CPCC 400858 based on genomic analysis. These compounds, featuring a unique structure, showed cytotoxicity against chronic myelocytic leukemia cells.

ORGANIC LETTERS (2022)

Article Environmental Sciences

Metagenomic insights into the antibiotic resistome in freshwater and seawater from an Antarctic ice-free area

Tao Zhang, Zhongqiang Ji, Jun Li, Liyan Yu

Summary: This study provides a comprehensive characterization of bacterial community compositions and antibiotic resistance gene profiles in Antarctic water environments. It reveals significant differences in bacterial community compositions and antibiotic resistance gene profiles between freshwater and seawater samples. In addition, certain physicochemical properties are found to be correlated with bacterial community compositions and antibiotic resistance gene profiles.

ENVIRONMENTAL POLLUTION (2022)

Article Biotechnology & Applied Microbiology

Isatropolone/isarubrolone Cm from Streptomyces with biological activity of inducing incomplete autophagy

Linli Li, Miaoqing Zhang, Shufen Li, Bingya Jiang, Jingpu Zhang, Liyan Yu, Hongyu Liu, Linzhuan Wu

Summary: In this study, methyl isatropolones and isarubrolone were identified from Streptomyces and found to induce autophagy in human HepG2 cells, suggesting their potential as drug candidates.

JOURNAL OF ANTIBIOTICS (2022)

Article Microbiology

Shinella lacus sp. nov., a novel microcystin- degrading alphaproteobacterium containing the bla carbapenemase gene

Zhi-Lian Gong, Yang Deng, Zhu -Ming Jiang, Lu-Qing Liu, Li-Yan Yu, Jing Su, Yu-Qin Zhang

Summary: A microcystin-degrading bacterium, Shinella lacus sp. nov., was isolated from a fresh water reservoir in Sichuan Province, China. It exhibited optimal growth at 28-32 degrees C and pH 7.0, and contained genes encoding peroxidase, bla carbapenemase, and the key enzyme for microcystin bio degradation. The bacterium showed adaptability to diverse environments.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2022)

Article Plant Sciences

A New Isobenzofuranone Derivative from Arctic Fungus Gyoerffyella sp. CPCC 401434

Bingyuan Zhang, Yan Tang, Zhe Guo, Jun Hu, Qingrong Du, Tao Zhang, Shengjun Dai, Baiping Ma, Liyan Yu, Dewu Zhang

Summary: A new isobenzofuranone derivative and six known compounds were isolated from Arctic fungus Gyoerffyella sp. CPCC 401434, and their structures and absolute configurations were determined. This is the first report of these compounds from the genus Gyoerffyella, and their cytotoxic and antibacterial activities were also studied.

RECORDS OF NATURAL PRODUCTS (2023)

Correction Multidisciplinary Sciences

An anti-influenza A virus microbial metabolite acts by degrading viral endonuclease PA (vol 13, 2079, 2022)

Jianyuan Zhao, Jing Wang, Xu Pang, Zhenlong Liu, Quanjie Li, Dongrong Yi, Yongxin Zhang, Xiaomei Fang, Tao Zhang, Rui Zhou, Zhe Guo, Wancang Liu, Xiaoyu Li, Chen Liang, Tao Deng, Fei Guo, Liyan Yu, Shan Cen

NATURE COMMUNICATIONS (2023)

Article Microbiology

An Integrative Study of Mycobiome in Different Habitats from a High Arctic Region: Diversity, Distribution, and Functional Role

Xiufei Chen, Dong Yan, Liyan Yu, Tao Zhang

Summary: In Arctic ecosystems, fungi play a crucial role in soil-plant interactions, nutrient cycling, and carbon transport. However, the mycobiome and its functional role in different habitats of the High Arctic region have not been thoroughly studied. This research aimed to investigate the mycobiome in nine habitats using high-throughput sequencing and found a total of 10,419 detected ASVs. The distribution of the mycobiome was influenced by habitat specificity, and various ecological guilds and growth forms were identified among different habitats.

JOURNAL OF FUNGI (2023)

Article Microbiology

Genomic and Transcriptomic Approaches Provide a Predictive Framework for Sesquiterpenes Biosynthesis in Desarmillaria tabescens CPCC 401429

Tao Zhang, Jianjv Feng, Wenni He, Xiaoting Rong, Hui Lv, Jun Li, Xinxin Li, Hao Wang, Lu Wang, Lixin Zhang, Liyan Yu

Summary: This study reveals the genome and the ability of Desarmillaria tabescens CPCC 401429 fungus to produce diverse sesquiterpene compounds. Through genomic analysis and transcriptomic sequencing, researchers have identified some novel sesquiterpene synthase genes and characterized two of them, confirming the potential of Desarmillaria in generating novel terpenoids.

JOURNAL OF FUNGI (2023)

Article Environmental Sciences

Shotgun metagenomics reveals a diverse mycobiome in the seawater from a High Arctic fjord (Kongsfjorden, Svalbard)

Tao Zhang, Zhongqiang Ji, Xiufei Chen, Liyan Yu

Summary: This study comprehensively characterized the mycobiome in seawater samples from Kongsfjorden, Svalbard, using shotgun metagenomics. The results showed a diverse mycobiome with significant differences in composition among different water layers. Depth, NO2 , and PO43  were identified as key factors influencing the mycobiome composition.

ENVIRONMENTAL RESEARCH (2023)

Article Biotechnology & Applied Microbiology

Verbalide A∼F: new phthalide derivatives from the endophytic fungus Preussia sp. CPCC 400972

Ran Zhang, Yujia Wang, Guowei Cai, Juxian Wang, Jianyuan Zhao, Jinglin Bai, Tao Zhang, Shan Cen, Wenni He, Liyan Yu

Summary: Six new phthalide derivatives, namely Verbalide A similar to F (1-6), and one known derivative (7), were isolated from the endophytic fungus Preussia sp. CPCC 400972. The structures of these compounds were determined through comprehensive spectroscopic analyses, including NMR and HRESIMS. Furthermore, compounds 1-7 showed excellent inhibitory effect against influenza A virus.

JOURNAL OF ANTIBIOTICS (2023)

Article Chemistry, Organic

Phenol Derivatives With Antiviral Activities from the Arctic Fungus Phoma muscivora CPCC 401424

Yan Tang, Jing Wang, Zhe Guo, Guowei Gu, Tao Zhang, Shan Cen, Liyan Yu, Shengjun Dai, Dewu Zhang

Summary: A new phenol derivative (1) and seven known phenol analogs (2-8) were isolated from Arctic fungus Phoma muscivora CPCC 401424. Their structures were determined using spectroscopic techniques and comparing with existing data. Compound 1 and 5 exhibited strong anti-influenza A virus activities with IC50 values of 2.20 and 2.17 μM, respectively. Compounds 1, 2, 5, and 7 showed moderate cytotoxic activities against Hela and H460 cancer cell lines.

LETTERS IN ORGANIC CHEMISTRY (2023)

暂无数据