Molecular Keys to the Janthinobacterium and Duganella spp. Interaction with the Plant Pathogen Fusarium graminearum

Molecular and Physical Factors That Influence Attachment of Vibrio vulnificus to Chitin

(2015) Tiffany C. Williams et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

(2015) Chunxu Song et al.   BMC GENOMICS

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

(2015) Nejc Stopnisek et al.   ISME Journal

Disruption of the GABA shunt affects mitochondrial respiration and virulence in the cereal pathogenFusarium graminearum

(2015) Jakob Bönnighausen et al.   MOLECULAR MICROBIOLOGY

The α-hydroxyketone LAI-1 regulates motility, Lqs-dependent phosphorylation signalling and gene expression ofLegionella pneumophila

(2015) Ursula Schell et al.   MOLECULAR MICROBIOLOGY

The type VI secretion system of Vibrio cholerae fosters horizontal gene transfer

(2015) S. Borgeaud et al.   SCIENCE

Genome sequence of Clostridium sporogenes DSM 795T, an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum

(2015) Anja Poehlein et al.   Standards in Genomic Sciences

Draft genome sequence of Janthinobacterium lividum strain MTR reveals its mechanism of capnophilic behavior

(2015) Natalia Valdes et al.   Standards in Genomic Sciences

Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway

(2015) Sylvia Simon et al.   PLoS Pathogens

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

(2014) Travis J Wheeler et al.   BMC BIOINFORMATICS

Identification of a Membrane-Bound Transcriptional Regulator That Links Chitin and Natural Competence in Vibrio cholerae

(2014) A. B. Dalia et al.   mBio

Winter bloom of a rare betaproteobacterium in the Arctic Ocean

(2014) Laura Alonso-Sáez et al.   Frontiers in Microbiology

Chitin Amendment Increases Soil Suppressiveness toward Plant Pathogens and Modulates the Actinobacterial and Oxalobacteraceal Communities in an Experimental Agricultural Field

(2013) Mariana Silvia Cretoiu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The cutaneous bacteriumJanthinobacterium lividuminhibits the growth ofTrichophyton rubrum in vitro

(2013) Jeremy P. Ramsey et al.   INTERNATIONAL JOURNAL OF DERMATOLOGY

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

A transcriptional regulator linking quorum sensing and chitin induction to render Vibrio cholerae naturally transformable

(2013) Mirella Lo Scrudato et al.   NUCLEIC ACIDS RESEARCH

Elevated Early Callose Deposition Results in Complete Penetration Resistance to Powdery Mildew in Arabidopsis

(2013) D. Ellinger et al.   PLANT PHYSIOLOGY

The Janthinobacterium sp. HH01 Genome Encodes a Homologue of the V. cholerae CqsA and L. pneumophila LqsA Autoinducer Synthases

(2013) Claudia Hornung et al.   PLoS One

Bacterial Chitinolytic Communities Respond to Chitin and pH Alteration in Soil

(2012) Anna M. Kielak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Qualimap: evaluating next-generation sequencing alignment data

(2012) Fernando García-Alcalde et al.   BIOINFORMATICS

Genome Sequence of Janthinobacterium sp. Strain PAMC 25724, Isolated from Alpine Glacier Cryoconite

(2012) S. J. Kim et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

α-Hydroxyketone Synthesis and Sensing by Legionella and Vibrio

(2012) André Tiaden et al.   SENSORS

Erratum to “Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov.” [Syst. Appl. Microbiol. 35 (2012) 19–23]

(2012) Peter Kämpfer et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The Regulatory Network of Natural Competence and Transformation of Vibrio cholerae

(2012) Mirella Lo Scrudato et al.   PLoS Genetics

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Quorum Sensing in Chromobacterium violaceum: DNA Recognition and Gene Regulation by the CviR Receptor

(2011) D. L. Stauff et al.   JOURNAL OF BACTERIOLOGY

Gut of Red-backed Salamanders (Plethodon cinereus) May Serve as a Reservoir for an Antifungal Cutaneous Bacterium

(2011) Patrick J. Wiggins et al.   JOURNAL OF HERPETOLOGY

Uncoupling of chitinase activity and uptake of hydrolysis products in freshwater bacterioplankton

(2011) Sara Beier et al.   LIMNOLOGY AND OCEANOGRAPHY

Bacterial-Fungal Interactions: Hyphens between Agricultural, Clinical, Environmental, and Food Microbiologists

(2011) P. Frey-Klett et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Antimycobacterial activity in vitro of pigments isolated from Antarctic bacteria

(2010) Nazia Mojib et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

ArcS, the Cognate Sensor Kinase in an Atypical Arc System of Shewanella oneidensis MR-1

(2010) J. Lassak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of the Violacein Biosynthetic Gene Cluster by Acylhomoserine Lactone-Mediated Quorum Sensing inChromobacterium violaceumATCC 12472

(2010) Tomohiro MOROHOSHI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The autoinducer synthase LqsA and putative sensor kinase LqsS regulate phagocyte interactions, extracellular filaments and a genomic island of Legionella pneumophila

(2010) André Tiaden et al.   ENVIRONMENTAL MICROBIOLOGY

Endofungal bacterium controls its host by an hrp type III secretion system

(2010) Gerald Lackner et al.   ISME Journal

Proteomic Analysis of Quorum Sensing-Dependent Proteins inBurkholderia glumae

(2010) Eunhye Goo et al.   JOURNAL OF PROTEOME RESEARCH

Bacterial/Fungal Interactions: From Pathogens to Mutualistic Endosymbionts

(2009) Donald Y. Kobayashi et al.   Annual Review of Phytopathology

The Bacterially Produced Metabolite Violacein Is Associated with Survival of Amphibians Infected with a Lethal Fungus

(2009) M. H. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

TheLegionellaAutoinducer Synthase LqsA Produces an α-Hydroxyketone Signaling Molecule

(2008) Thomas Spirig et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus

(2008) Robert M. Brucker et al.   JOURNAL OF CHEMICAL ECOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS