Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Current hypotheses to explain genetic chaos under the sea

(2016) Bjarki Eldon et al.   Current Zoology

Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies

(2016) Cynthia Riginos et al.   Current Zoology

Current hypotheses to explain genetic chaos under the sea

(2016) Bjarki Eldon et al.   Current Zoology

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Alleles versus mutations: Understanding the evolution of genetic architecture requires a molecular perspective on allelic origins

(2015) David L. Remington   EVOLUTION

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

(2015) Pierre-Alexandre Gagnaire et al.   Evolutionary Applications

The evolutionary legacy of size-selective harvesting extends from genes to populations

(2015) Silva Uusi-Heikkilä et al.   Evolutionary Applications

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

Heritable differences in fitness-related traits among populations of the mustard hill coral, Porites astreoides

(2015) C D Kenkel et al.   HEREDITY

Detecting adaptive evolution based on association with ecological gradients: Orientation matters!

(2015) E Frichot et al.   HEREDITY

Heterogeneity of genetic architecture of body size traits in a free-living population

(2015) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations

(2015) Anna W. Santure et al.   MOLECULAR ECOLOGY

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

(2015) M. Laporte et al.   MOLECULAR ECOLOGY

Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

(2015) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

Integration of Random Forest with population-based outlier analyses provides insight on the genomic basis and evolution of run timing in Chinook salmon (Oncorhynchus tshawytscha)

(2015) Marine S. O. Brieuc et al.   MOLECULAR ECOLOGY

Detection of selective sweeps in structured populations: a comparison of recent methods

(2015) Alexandra I. Vatsiou et al.   MOLECULAR ECOLOGY

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

A review of genotype-by-environment interaction and micro-environmental sensitivity in aquaculture species

(2015) Panya Sae-Lim et al.   Reviews in Aquaculture

A new FST-based method to uncover local adaptation using environmental variables

(2015) Pierre de Villemereuil et al.   Methods in Ecology and Evolution

Widespread Signals of Convergent Adaptation to High Altitude in Asia and America

(2014) Matthieu Foll et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fisheries-induced neutral and adaptive evolution in exploited fish populations and consequences for their adaptive potential

(2014) Lise Marty et al.   Evolutionary Applications

How and why should we implement genomics into conservation?

(2014) Barry J. McMahon et al.   Evolutionary Applications

Using genomics to characterize evolutionary potential for conservation of wild populations

(2014) Katherine A. Harrisson et al.   Evolutionary Applications

Evolutionary conservation-evaluating the adaptive potential of species

(2014) Christophe Eizaguirre et al.   Evolutionary Applications

Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)

(2014) Susan E. Johnston et al.   MOLECULAR ECOLOGY

Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan

(2014) Vincent Bourret et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Genetics of ecological divergence during speciation

(2014) Matthew E. Arnegard et al.   NATURE

Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples

(2014) Peter M. Visscher et al.   PLoS Genetics

A Population Genetic Signal of Polygenic Adaptation

(2014) Jeremy J. Berg et al.   PLoS Genetics

High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study

(2013) Sean M Hoban et al.   BMC BIOINFORMATICS

Predicting evolutionary responses to climate change in the sea

(2013) Philip L. Munday et al.   ECOLOGY LETTERS

THE EFFECT OF COLLECTIVE DISPERSAL ON THE GENETIC STRUCTURE OF A SUBDIVIDED POPULATION

(2013) Jonathan M. Yearsley et al.   EVOLUTION

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Evidence for Polygenic Adaptation to Pathogens in the Human Genome

(2013) Josephine T. Daub et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

Partitioning of genetic variation across the genome using multimarker methods in a wild bird population

(2013) Matthew R. Robinson et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic

(2013) Melissa H. Pespeni et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of genetic architectures underlying quantitative traits

(2013) E. Rajon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution in an acidifying ocean

(2013) Jennifer M. Sunday et al.   TRENDS IN ECOLOGY & EVOLUTION

Estimating heritability using genomic data

(2013) John Stanton-Geddes et al.   Methods in Ecology and Evolution

Detecting correlation between allele frequencies and environmental variables as a signature of selection. A fast computational approach for genome-wide studies

(2013) Gilles Guillot et al.   Spatial Statistics

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Spatial scale and divergent patterns of variation in adapted traits in the ocean

(2012) Lyndie A. Hice et al.   ECOLOGY LETTERS

GENETIC DRIFT AND COLLECTIVE DISPERSAL CAN RESULT IN CHAOTIC GENETIC PATCHINESS

(2012) Thomas Broquet et al.   EVOLUTION

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish(Coregonus clupeaformis)

(2012) Pierre-Alexandre Gagnaire et al.   MOLECULAR ECOLOGY

Monitoring adaptive genetic responses to environmental change

(2012) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Localising Loci underlying Complex Trait Variation Using Regional Genomic Relationship Mapping

(2012) Yoshitaka Nagamine et al.   PLoS One

Sweepstakes Reproductive Success in Highly Fecund Marine Fish and Shellfish: A Review and Commentary

(2011) Dennis Hedgecock et al.   BULLETIN OF MARINE SCIENCE

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata )

(2011) Pierre-Alexandre Gagnaire et al.   GENETICS

Comparisons between QST and FST-how wrong have we been?

(2011) PIM EDELAAR et al.   MOLECULAR ECOLOGY

The coupling hypothesis: why genome scans may fail to map local adaptation genes

(2011) NICOLAS BIERNE et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Building evolutionary resilience for conserving biodiversity under climate change

(2010) Carla M. Sgrò et al.   Evolutionary Applications

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

(2010) Elizabeth K Speliotes et al.   NATURE GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Genome mapping in intensively studied wild vertebrate populations

(2010) Jon Slate et al.   TRENDS IN GENETICS

Understanding Adaptation in Large Populations

(2010) Nick Barton   PLoS Genetics

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Gene Flow and Isolation among Populations of Marine Animals

(2009) Michael E. Hellberg   Annual Review of Ecology Evolution and Systematics

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

Common polygenic variation contributes to risk of schizophrenia and bipolar disorder

(2009) Shaun M. Purcell et al.   NATURE

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

On the Origin and Spread of an Adaptive Allele in Deer Mice

(2009) C. R. Linnen et al.   SCIENCE

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics

Predicting Unobserved Phenotypes for Complex Traits from Whole-Genome SNP Data

(2008) Sang Hong Lee et al.   PLoS Genetics