Raman spectroscopy detects phenotypic differences amongEscherichia colienriched for 1-butanol tolerance using a metagenomic DNA library

Assessment ofex vivoperfused liver health by Raman spectroscopy

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grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

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Near-Real-Time Analysis of the Phenotypic Responses of Escherichia coli to 1-Butanol Exposure Using Raman Spectroscopy

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Single Cell Kinetics of Phenotypic Switching in the Arabinose Utilization System of E. coli

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Phenotypic Profiling of Antibiotic Response Signatures in Escherichia coli Using Raman Spectroscopy

(2013) A. I. M. Athamneh et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genetic Determinants forn-Butanol Tolerance in Evolved Escherichia coli Mutants: Cross Adaptation and Antagonistic Pleiotropy betweenn-Butanol and Other Stressors

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Isolation of Butanol- and Isobutanol-Tolerant Bacteria and Physiological Characterization of Their Butanol Tolerance

(2013) Manabu Kanno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation

(2013) Daniel González-Ramos et al.   Biotechnology for Biofuels

Improvement of n-butanol tolerance in Escherichia coli by membrane-targeted tilapia metallothionein

(2013) Wei-Chih Chin et al.   Biotechnology for Biofuels

Metabolic Engineering: Past and Future

(2013) Benjamin M. Woolston et al.   Annual Review of Chemical and Biomolecular Engineering

Qualimap: evaluating next-generation sequencing alignment data

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Visualizing evolution in real time to determine the molecular mechanisms of n-butanol tolerance in Escherichia coli

(2012) Luis H. Reyes et al.   METABOLIC ENGINEERING

GroESL overexpression imparts Escherichia coli tolerance to i-, n-, and 2-butanol, 1,2,4-butanetriol and ethanol with complex and unpredictable patterns

(2012) Kyle A. Zingaro et al.   METABOLIC ENGINEERING

Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli

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Fast gapped-read alignment with Bowtie 2

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Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples

(2012) Amanda J. Martino et al.   Frontiers in Microbiology

Raman spectroscopic detection of physiology changes in plasmid-bearing Escherichia coli with and without antibiotic treatment

(2011) Angela Walter et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production

(2011) Tina Lütke-Eversloh et al.   CURRENT OPINION IN BIOTECHNOLOGY

Fermentative production of butanol—the industrial perspective

(2011) Edward M Green   CURRENT OPINION IN BIOTECHNOLOGY

Coexisting/Coexpressing Genomic Libraries (CoGeL) identify interactions among distantly located genetic loci for developing complex microbial phenotypes

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Genomic Library Screens for Genes Involved in n-Butanol Tolerance in Escherichia coli

(2011) Luis H. Reyes et al.   PLoS One

Engineering butanol-tolerance in escherichia coli with artificial transcription factor libraries

(2010) Ju Young Lee et al.   BIOTECHNOLOGY AND BIOENGINEERING

Novel Escherichia coli hybrids with enhanced butanol tolerance

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NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing

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Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli

(2010) Shota Atsumi et al.   Molecular Systems Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Metabolic engineering ofClostridium acetobutylicumM5 for highly selective butanol production

(2009) Jin Young Lee et al.   Biotechnology Journal

Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)

(2009) Haeyoung Jeong et al.   JOURNAL OF MOLECULAR BIOLOGY

How microbes tolerate ethanol and butanol

(2009) Siqing Liu et al.   New Biotechnology

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction–modification gene complex

(2009) Yoko Asakura et al.   NUCLEIC ACIDS RESEARCH

Fermentative butanol production by clostridia

(2008) Sang Yup Lee et al.   BIOTECHNOLOGY AND BIOENGINEERING

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Engineering solventogenic clostridia

(2008) Eleftherios T Papoutsakis   CURRENT OPINION IN BIOTECHNOLOGY

Combinatorial engineering of microbes for optimizing cellular phenotype

(2008) Christine Nicole S Santos et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse

(2008) T. Durfee et al.   JOURNAL OF BACTERIOLOGY

Metabolic engineering of Escherichia coli for 1-butanol production

(2007) Shota Atsumi et al.   METABOLIC ENGINEERING