Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression

Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin lineage

(2015) Y-h Taguchi   BMC BIOINFORMATICS

Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease

(2015) Y-h Taguchi et al.   BMC BIOINFORMATICS

Comprehensive analysis of transcriptome and metabolome analysis in Intrahepatic Cholangiocarcinoma and Hepatocellular Carcinoma

(2015) Yoshiki Murakami et al.   Scientific Reports

TINAGL1 and B3GALNT1 are potential therapy target genes to suppress metastasis in non-small cell lung cancer

(2014) Hideaki Umeyama et al.   BMC GENOMICS

Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

(2014) Ryoichi Kinoshita et al.   BMC Systems Biology

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

(2014) Alberto Santos et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Comparison of Hepatocellular Carcinoma miRNA Expression Profiling as Evaluated by Next Generation Sequencing and Microarray

(2014) Yoshiki Murakami et al.   PLoS One

Bioinformatic Screening of Autoimmune Disease Genes and Protein Structure Prediction with FAMS for Drug Discovery

(2014) Shigeharu Ishida et al.   PROTEIN AND PEPTIDE LETTERS

GeneMANIA Prediction Server 2013 Update

(2013) Khalid Zuberi et al.   NUCLEIC ACIDS RESEARCH

Principal Component Analysis Based Feature Extraction Approach to Identify Circulating microRNA Biomarkers

(2013) Y-h. Taguchi et al.   PLoS One

Comprehensive miRNA Expression Analysis in Peripheral Blood Can Diagnose Liver Disease

(2012) Yoshiki Murakami et al.   PLoS One

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

(2012) Rama Balakrishnan et al.   Database-The Journal of Biological Databases and Curation

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols