Detecting gene-gene interactions using a permutation-based random forest method

Understanding multicellular function and disease with human tissue-specific networks

(2015) Casey S Greene et al.   NATURE GENETICS

Knowledge-driven genomic interactions: an application in ovarian cancer

(2014) Dokyoon Kim et al.   BioData Mining

Transcription onset of genes critical in liver carcinogenesis is epigenetically regulated by methylated DNA-binding protein MBD2

(2013) Barbara Stefanska et al.   CARCINOGENESIS

Random forest fishing: a novel approach to identifying organic group of risk factors in genome-wide association studies

(2013) Wei Yang et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Random forests for genomic data analysis

(2012) Xi Chen et al.   GENOMICS

Mining Pure, Strict Epistatic Interactions from High-Dimensional Datasets: Ameliorating the Curse of Dimensionality

(2012) Xia Jiang et al.   PLoS One

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

Guidelines for Genome-Wide Association Studies

(2012) Gregory S. Barsh et al.   PLoS Genetics

GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures

(2012) Ryan J Urbanowicz et al.   BioData Mining

Predicting the difficulty of pure, strict, epistatic models: metrics for simulated model selection

(2012) Ryan J Urbanowicz et al.   BioData Mining

Characterizing genetic interactions in human disease association studies using statistical epistasis networks

(2011) Ting Hu et al.   BMC BIOINFORMATICS

Brief review of regression-based and machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience

(2011) Abhijit Dasgupta et al.   GENETIC EPIDEMIOLOGY

On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data

(2010) Daniel F. Schwarz et al.   BIOINFORMATICS

Bioinformatics challenges for genome-wide association studies

(2010) J. H. Moore et al.   BIOINFORMATICS

Genomewide Association Studies and Assessment of the Risk of Disease

(2010) Teri A. Manolio   NEW ENGLAND JOURNAL OF MEDICINE

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Epistasis and Its Implications for Personal Genetics

(2009) Jason H. Moore et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Detecting gene–gene interactions that underlie human diseases

(2009) Heather J Cordell   NATURE REVIEWS GENETICS

Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions

(2009) Casey S Greene et al.   BioData Mining