A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut
出版年份 2016 全文链接
标题
A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut
作者
关键词
Cloning, Insertion mutation, Nonsense mutation, Natural selection, Deletion mutation, Operons, Evolutionary adaptation, Fluorescence competition
出版物
PLoS Genetics
Volume 12, Issue 11, Pages e1006420
出版商
Public Library of Science (PLoS)
发表日期
2016-11-04
DOI
10.1371/journal.pgen.1006420
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Know your neighbor: Microbiota and host epithelial cells interact locally to control intestinal function and physiology
- (2016) Felix Sommer et al. BIOESSAYS
- Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species
- (2015) Sharon Greenblum et al. CELL
- Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments
- (2015) Elizabeth R Jerison et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Simple Phenotypic Sweeps Hide Complex Genetic Changes in Populations
- (2015) Ram P. Maharjan et al. Genome Biology and Evolution
- Elucidating the molecular architecture of adaptation via evolve and resequence experiments
- (2015) Anthony Long et al. NATURE REVIEWS GENETICS
- Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria
- (2015) João Barroso-Batista et al. Nature Communications
- Where Next for Microbiome Research?
- (2015) Matthew K. Waldor et al. PLOS BIOLOGY
- Coordinated Evolution of Influenza A Surface Proteins
- (2015) Alexey D. Neverov et al. PLoS Genetics
- The rule of declining adaptability in microbial evolution experiments
- (2015) Alejandro Couce et al. Frontiers in Genetics
- The functional basis of adaptive evolution in chemostats
- (2014) David Gresham et al. FEMS MICROBIOLOGY REVIEWS
- Mining the Human Gut Microbiota for Effector Strains that Shape the Immune System
- (2014) Philip P. Ahern et al. IMMUNITY
- Empirical fitness landscapes and the predictability of evolution
- (2014) J. Arjan G.M. de Visser et al. NATURE REVIEWS GENETICS
- More than a Gut Feeling: the Microbiota Regulates Neurodevelopment and Behavior
- (2014) John F Cryan et al. NEUROPSYCHOPHARMACOLOGY
- Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli
- (2014) J. Plucain et al. SCIENCE
- The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps
- (2014) João Barroso-Batista et al. PLoS Genetics
- Mapping the Fitness Landscape of Gene Expression Uncovers the Cause of Antagonism and Sign Epistasis between Adaptive Mutations
- (2014) Hsin-Hung Chou et al. PLoS Genetics
- Rates of transposition in Escherichia coli
- (2013) A. Sousa et al. Biology Letters
- SIGN EPISTASIS LIMITS EVOLUTIONARY TRADE-OFFS AT THE CONFLUENCE OF SINGLE- AND MULTI-CARBON METABOLISM INMETHYLOBACTERIUM EXTORQUENSAM1
- (2013) Sean Michael Carroll et al. EVOLUTION
- The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally
- (2013) Dan M. Park et al. PLoS Genetics
- Bacterial Adaptation through Loss of Function
- (2013) Alison K. Hottes et al. PLoS Genetics
- Evolution of clonal populations approaching a fitness peak
- (2012) I. Gordo et al. Biology Letters
- Diversity, stability and resilience of the human gut microbiota
- (2012) Catherine A. Lozupone et al. NATURE
- The multiplicity of divergence mechanisms in a single evolving population
- (2012) Ram P Maharjan et al. GENOME BIOLOGY
- Anaerobic Respiration of Escherichia coli in the Mouse Intestine
- (2011) Shari A. Jones et al. INFECTION AND IMMUNITY
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- The causes of epistasis
- (2011) J. A. G. M. de Visser et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population
- (2011) A. I. Khan et al. SCIENCE
- Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation
- (2011) H.-H. Chou et al. SCIENCE
- Epistasis between Beneficial Mutations and the Phenotype-to-Fitness Map for a ssDNA Virus
- (2011) Darin R. Rokyta et al. PLoS Genetics
- Mutational Effects and Population Dynamics During Viral Adaptation Challenge Current Models
- (2010) C. R. Miller et al. GENETICS
- EcoCyc: a comprehensive database of Escherichia coli biology
- (2010) I. M. Keseler et al. NUCLEIC ACIDS RESEARCH
- Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
- (2009) B. M. Hall et al. BIOINFORMATICS
- The Genetic Basis of Phenotypic Adaptation II: The Distribution of Adaptive Substitutions in the Moving Optimum Model
- (2009) Michael Kopp et al. GENETICS
- Genome evolution and adaptation in a long-term experiment with Escherichia coli
- (2009) Jeffrey E. Barrick et al. NATURE
- From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation
- (2009) Ville Mustonen et al. TRENDS IN GENETICS
- The Properties of Adaptive Walks in Evolving Populations of Fungus
- (2009) Sijmen E. Schoustra et al. PLOS BIOLOGY
- Toward the Use of Genomics to Study Microevolutionary Change in Bacteria
- (2009) Daniel Falush PLoS Genetics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started