A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

Atypical Transcriptional Activation by TCF via a Zic Transcription Factor in C. elegans Neuronal Precursors

(2015) Sabrina Murgan et al.   DEVELOPMENTAL CELL

Gene regulatory systems that control gene expression in the Ciona embryo

(2015) Yutaka SATOU et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Induction and dorsal restriction of Paired-box 3 (Pax3) gene expression in the caudal neuroectoderm is mediated by integration of multiple pathways on a short neural crest enhancer

(2014) Oraly Sanchez-Ferras et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

β-Catenin-Driven Binary Fate Specification Segregates Germ Layers in Ascidian Embryos

(2013) Clare Hudson et al.   CURRENT BIOLOGY

Transcriptional regulation in the early ectodermal lineage of ascidian embryos

(2013) Yosuke Horikawa et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis

(2013) Terumi Matsuoka et al.   DEVELOPMENTAL BIOLOGY

Cis-Acting Transcriptional Repression Establishes a Sharp Boundary in Chordate Embryos

(2012) K. S. Imai et al.   SCIENCE

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

(2012) Seth Frietze et al.   GENOME BIOLOGY

A Maternal Factor Unique to Ascidians Silences the Germline via Binding to P-TEFb and RNAP II Regulation

(2011) Gaku Kumano et al.   CURRENT BIOLOGY

Ci-Pem-1 localizes to the nucleus and represses somatic gene transcription in the germline of Ciona intestinalis embryos

(2011) M. Shirae-Kurabayashi et al.   DEVELOPMENT

Transcription Factor Zic2 Inhibits Wnt/β-Catenin Protein Signaling

(2011) Rasoul Pourebrahim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Genomic cis-regulatory networks in the early Ciona intestinalis embryo

(2010) A. Kubo et al.   DEVELOPMENT

Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis

(2010) J. E. Kugler et al.   JOURNAL OF CELL SCIENCE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis

(2008) M.-L. Martin-Magniette et al.   BIOINFORMATICS