Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

A meta analysis of genome-wide association studies for limb bone lengths in four pig populations

(2015) Yuanmei Guo et al.   BMC GENETICS

motifDiverge: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences

(2015) Dennis Kostka et al.   Statistics and Its Interface

Exploring the genesis and functions of Human Accelerated Regions sheds light on their role in human evolution

(2014) Melissa J Hubisz et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Genome-wide identification of signaling center enhancers in the developing limb

(2014) J. E. VanderMeer et al.   DEVELOPMENT

Gibbon genome and the fast karyotype evolution of small apes

(2014) Lucia Carbone et al.   NATURE

Unique expression patterns of multiple key genes associated with the evolution of mammalian flight

(2014) Z. Wang et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative inner ear transcriptome analysis between the Rickett’s big-footed bats (Myotis ricketti) and the greater short-nosed fruit bats (Cynopterus sphinx)

(2013) Dong Dong et al.   BMC GENOMICS

The ZIC gene family encodes multi-functional proteins essential for patterning and morphogenesis

(2013) Rob Houtmeyers et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Decoupling the function of Hox and Shh in developing limb reveals multiple inputs of Hox genes on limb growth

(2013) R. Sheth et al.   DEVELOPMENT

Recent advances in the study of testicular nuclear receptor 4

(2013) Xian-fan Ding et al.   Journal of Zhejiang University-SCIENCE B

EMAGE mouse embryo spatial gene expression database: 2014 update

(2013) Lorna Richardson et al.   NUCLEIC ACIDS RESEARCH

Many human accelerated regions are developmental enhancers

(2013) J. A. Capra et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

(2013) G. Andrey et al.   SCIENCE

Twist2 contributes to termination of limb bud outgrowth and patterning through direct regulation of Grem1

(2012) Christine Wade et al.   DEVELOPMENTAL BIOLOGY

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

(2012) Justin Cotney et al.   GENOME RESEARCH

Spg20−/− mice reveal multimodal functions for Troyer syndrome protein spartin in lipid droplet maintenance, cytokinesis and BMP signaling

(2012) Benoît Renvoisé et al.   HUMAN MOLECULAR GENETICS

Preaxial polydactyly caused by Gli3 haploinsufficiency is rescued by Zic3 loss of function in mice

(2012) Malgorzata E. Quinn et al.   HUMAN MOLECULAR GENETICS

The odd-skipped related genes Osr1 and Osr2 are induced by 1,25-dihydroxyvitamin D3

(2012) Lieve Verlinden et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Reduced osteoblast activity in the mice lacking TR4 nuclear receptor leads to osteoporosis

(2012) Shin-Jen Lin et al.   Reproductive Biology and Endocrinology

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

(2012) G. Zhang et al.   SCIENCE

Landscapes and archipelagos: spatial organization of gene regulation in vertebrates

(2012) Thomas Montavon et al.   TRENDS IN CELL BIOLOGY

Premature aging with impaired oxidative stress defense in mice lacking TR4

(2011) Yi-Fen Lee et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Loss of transcription factor early growth response gene 1 results in impaired endochondral bone repair

(2011) Marie K. Reumann et al.   BONE

A Regulatory Archipelago Controls Hox Genes Transcription in Digits

(2011) Thomas Montavon et al.   CELL

The zinc finger transcription factors Osr1 and Osr2 control synovial joint formation

(2011) Yang Gao et al.   DEVELOPMENTAL BIOLOGY

cis-regulatory mutations are a genetic cause of human limb malformations

(2011) Julia E. VanderMeer et al.   DEVELOPMENTAL DYNAMICS

Integration and dissociation of limb elements in flying vertebrates: a comparison of pterosaurs, birds and bats

(2011) E. BELL et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Variants modulating the expression of a chromosome domain encompassing PLAG1 influence bovine stature

(2011) Latifa Karim et al.   NATURE GENETICS

Odd-Skipped Related Genes Regulate Differentiation of Embryonic Limb Mesenchyme and Bone Marrow Mesenchymal Stromal Cells

(2011) Sigmar Stricker et al.   STEM CELLS AND DEVELOPMENT

Evaluation of Maternal Features as Indicators of Asynchronous Embryonic Development inMiniopterus natalensis

(2010) Mandy K. Mason et al.   ACTA CHIROPTEROLOGICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

PHAST and RPHAST: phylogenetic analysis with space/time models

(2010) M. J. Hubisz et al.   BRIEFINGS IN BIOINFORMATICS

Sprouty1 Regulates Reversible Quiescence of a Self-Renewing Adult Muscle Stem Cell Pool during Regeneration

(2010) Kelly L. Shea et al.   Cell Stem Cell

An examination of the Chiropteran HoxD locus from an evolutionary perspective

(2010) Russell Ray et al.   EVOLUTION & DEVELOPMENT

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A BMP-Shh negative-feedback loop restricts Shh expression during limb development

(2009) M. F. Bastida et al.   DEVELOPMENT

Fgf signaling components are associated with muscles and tendons during limb development

(2009) Sophie Eloy-Trinquet et al.   DEVELOPMENTAL DYNAMICS

The role of early development in mammalian limb diversification: A descriptive comparison of early limb development between the natal long-fingered bat (Miniopterus natalensis) and the mouse (Mus musculus)

(2009) Dorit Hockman et al.   DEVELOPMENTAL DYNAMICS

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

Transforming Growth Factors β Coordinate Cartilage and Tendon Differentiation in the Developing Limb Mesenchyme

(2009) Carlos I. Lorda-Diez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genomic views of distant-acting enhancers

(2009) Axel Visel et al.   NATURE

ChIP-seq accurately predicts tissue-specific activity of enhancers

(2009) Axel Visel et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Overexpression of Spry1 in chondrocytes causes attenuated FGFR ubiquitination and sustained ERK activation resulting in chondrodysplasia

(2008) Xuehui Yang et al.   DEVELOPMENTAL BIOLOGY

Understanding of bat wing evolution takes flight

(2008) K. L. Cooper et al.   GENES & DEVELOPMENT

Regulatory divergence modifies limb length between mammals

(2008) C. J. Cretekos et al.   GENES & DEVELOPMENT

Canine Polydactyl Mutations With Heterogeneous Origin in the Conserved Intronic Sequence of LMBR1

(2008) K. Park et al.   GENETICS

Primitive Early Eocene bat from Wyoming and the evolution of flight and echolocation

(2008) Nancy B. Simmons et al.   NATURE

Many sequence variants affecting diversity of adult human height

(2008) Daniel F Gudbjartsson et al.   NATURE GENETICS

A second wave of Sonic hedgehog expression during the development of the bat limb

(2008) D. Hockman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human-Specific Gain of Function in a Developmental Enhancer

(2008) S. Prabhakar et al.   SCIENCE