CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing
出版年份 2016 全文链接
标题
CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing
作者
关键词
Array CGH, Genomic libraries, Morphogenic segmentation, Genome analysis, Genomic library construction, Comparative genomics, DNA sequencing, Genome sequencing
出版物
PLoS Computational Biology
Volume 12, Issue 4, Pages e1004873
出版商
Public Library of Science (PLoS)
发表日期
2016-04-22
DOI
10.1371/journal.pcbi.1004873
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
- (2015) Marghoob Mohiyuddin et al. BIOINFORMATICS
- CODEX: a normalization and copy number variation detection method for whole exome sequencing
- (2015) Yuchao Jiang et al. NUCLEIC ACIDS RESEARCH
- CopywriteR: DNA copy number detection from off-target sequence data
- (2015) Thomas Kuilman et al. GENOME BIOLOGY
- PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data
- (2014) Chen Wang et al. BIOINFORMATICS
- cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data
- (2014) Evangelos Bellos et al. BIOINFORMATICS
- CANOES: detecting rare copy number variants from whole exome sequencing data
- (2014) Daniel Backenroth et al. NUCLEIC ACIDS RESEARCH
- Dissemination of scientific software with Galaxy ToolShed
- (2014) Daniel Blankenberg et al. GENOME BIOLOGY
- Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives
- (2013) Min Zhao et al. BMC BIOINFORMATICS
- Recurrent BRAF kinase fusions in melanocytic tumors offer an opportunity for targeted therapy
- (2013) Thomas Botton et al. Pigment Cell & Melanoma Research
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
- (2013) Layla Oesper et al. GENOME BIOLOGY
- EXCAVATOR: detecting copy number variants from whole-exome sequencing data
- (2013) Alberto Magi et al. GENOME BIOLOGY
- Discovery and Statistical Genotyping of Copy-Number Variation from Whole-Exome Sequencing Depth
- (2012) Menachem Fromer et al. AMERICAN JOURNAL OF HUMAN GENETICS
- CONTRA: copy number analysis for targeted resequencing
- (2012) Jason Li et al. BIOINFORMATICS
- A robust model for read count data in exome sequencing experiments and implications for copy number variant calling
- (2012) Vincent Plagnol et al. BIOINFORMATICS
- Comparative exome sequencing of metastatic lesions provides insights into the mutational progression of melanoma
- (2012) Jared J Gartner et al. BMC GENOMICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Copy number variation detection and genotyping from exome sequence data
- (2012) N. Krumm et al. GENOME RESEARCH
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
- (2012) Günter Klambauer et al. NUCLEIC ACIDS RESEARCH
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV
- (2011) Jarupon Fah Sathirapongsasuti et al. BIOINFORMATICS
- Parent-specific copy number in paired tumor–normal studies using circular binary segmentation
- (2011) Adam B. Olshen et al. BIOINFORMATICS
- Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion
- (2011) R. Xi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
- (2010) Valentina Boeva et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Detecting copy number variation with mated short reads
- (2010) P. Medvedev et al. GENOME RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Sensitive and accurate detection of copy number variants using read depth of coverage
- (2009) S. Yoon et al. GENOME RESEARCH
- A fast and flexible method for the segmentation of aCGH data
- (2008) E. Ben-Yaacov et al. BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started