metagene Profiles Analyses Reveal Regulatory Element’s Factor-Specific Recruitment Patterns
出版年份 2016 全文链接
标题
metagene Profiles Analyses Reveal Regulatory Element’s Factor-Specific Recruitment Patterns
作者
关键词
Transcriptional control, Transcription factors, Promoter regions, DNA transcription, Cofactors (biochemistry), Experimental design, Genomic signal processing, Permutation
出版物
PLoS Computational Biology
Volume 12, Issue 8, Pages e1004751
出版商
Public Library of Science (PLoS)
发表日期
2016-08-19
DOI
10.1371/journal.pcbi.1004751
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- Is this the right normalization? A diagnostic tool for ChIP-seq normalization
- (2015) Claudia Angelini et al. BMC BIOINFORMATICS
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Structural basis of transcription initiation by RNA polymerase II
- (2015) Sarah Sainsbury et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Hierarchy of Transcriptional Activation: From Enhancer to Promoter
- (2015) Douglas Vernimmen et al. TRENDS IN GENETICS
- Gateways to the FANTOM5 promoter level mammalian expression atlas
- (2015) Marina Lizio et al. GENOME BIOLOGY
- ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
- (2014) Li Shen et al. BMC GENOMICS
- Enhancer Function: Mechanistic and Genome-Wide Insights Come Together
- (2014) Jennifer L. Plank et al. MOLECULAR CELL
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex
- (2013) K. Murakami et al. SCIENCE
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Normalization of ChIP-seq data with control
- (2012) Kun Liang et al. BMC BIOINFORMATICS
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- (2012) A. Kundaje et al. GENOME RESEARCH
- A Statistical Framework for the Analysis of ChIP-Seq Data
- (2011) Pei Fen Kuan et al. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
- ChIP-Seq: technical considerations for obtaining high-quality data
- (2011) Benjamin L Kidder et al. NATURE IMMUNOLOGY
- Enhancer function: new insights into the regulation of tissue-specific gene expression
- (2011) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- PICS: Probabilistic Inference for ChIP-seq
- (2010) Xuekui Zhang et al. BIOMETRICS
- ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
- (2010) Lihua J Zhu et al. BMC BIOINFORMATICS
- Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts
- (2010) A. M. Szalkowski et al. BRIEFINGS IN BIOINFORMATICS
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers
- (2010) Francesca De Santa et al. PLOS BIOLOGY
- CEAS: cis-regulatory element annotation system
- (2009) Hyunjin Shin et al. BIOINFORMATICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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