Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Cellulose Degradation by Polysaccharide Monooxygenases

(2015) William T. Beeson et al.   Annual Review of Biochemistry

Microbial composition alters the response of litter decomposition to environmental change

(2015) Kristin L. Matulich et al.   ECOLOGY

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

The Cellobiose Sensor CebR Is the Gatekeeper of Streptomyces scabies Pathogenicity

(2015) Isolde M. Francis et al.   mBio

Cellulolytic Streptomyces Strains Associated with Herbivorous Insects Share a Phylogenetically Linked Capacity To Degrade Lignocellulose

(2014) Adam J. Book et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases

(2014) Adam J Book et al.   Biotechnology for Biofuels

Characterization of Actinobacteria Associated with Three Ant–Plant Mutualisms

(2014) Alissa S. Hanshew et al.   MICROBIAL ECOLOGY

Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases

(2014) Z. Forsberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects

(2014) Frank O. Aylward et al.   mBio

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Mountain Pine Beetles Colonizing Historical and Naïve Host Trees Are Associated with a Bacterial Community Highly Enriched in Genes Contributing to Terpene Metabolism

(2013) Aaron S. Adams et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes

(2013) James R Doroghazi et al.   BMC GENOMICS

Taxonomic and functional diversity ofStreptomycesin a forest soil

(2013) Cyril Bontemps et al.   FEMS MICROBIOLOGY LETTERS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces

(2013) Taichi E. Takasuka et al.   Scientific Reports

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production and characterization of multiple cellulolytic enzymes by isolated Streptomyces sp. MDS

(2012) Ganesh D. Saratale et al.   BIOMASS & BIOENERGY

Microtermolides A and B from Termite-Associated Streptomyces sp. and Structural Revision of Vinylamycin

(2012) Gavin Carr et al.   ORGANIC LETTERS

Accounting For Alignment Uncertainty in Phylogenomics

(2012) Martin Wu et al.   PLoS One

Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria

(2012) Iain Anderson et al.   PLoS One

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes

(2011) Steven T Pullan et al.   BMC GENOMICS

Microbial diversity of cellulose hydrolysis

(2011) David B Wilson   CURRENT OPINION IN MICROBIOLOGY

Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio

(2011) Aaron S Adams et al.   ISME Journal

Exploring the Potential for Actinobacteria as Defensive Symbionts in Fungus-Growing Termites

(2011) Anna A. Visser et al.   MICROBIAL ECOLOGY

Chemical Analyses of Wasp-Associated Streptomyces Bacteria Reveal a Prolific Potential for Natural Products Discovery

(2011) Michael Poulsen et al.   PLoS One

Cleavage of cellulose by a CBM33 protein

(2011) Zarah Forsberg et al.   PROTEIN SCIENCE

Biology and biotechnology of Trichoderma

(2010) André Schuster et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Geographic Variation in Bacterial Communities Associated With the Red Turpentine Beetle (Coleoptera: Curculionidae)

(2010) Aaron S. Adams et al.   ENVIRONMENTAL ENTOMOLOGY

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

An Oxidative Enzyme Boosting the Enzymatic Conversion of Recalcitrant Polysaccharides

(2010) Gustav Vaaje-Kolstad et al.   SCIENCE

CebR as a Master Regulator for Cellulose/Cellooligosaccharide Catabolism Affects Morphological Development in Streptomyces griseus

(2009) K. Marushima et al.   JOURNAL OF BACTERIOLOGY

Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367

(2009) Andrew C. Tolonen et al.   MOLECULAR MICROBIOLOGY

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal secretomes—nature’s toolbox for white biotechnology

(2008) Henning Bouws et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The biosyntheticgene cluster of zorbamycin, a member of the bleomycin family of antitumor antibiotics, from Streptomyces flavoviridis ATCC 21892

(2008) Ute Galm et al.   Molecular BioSystems

Bacterial Protection of Beetle-Fungus Mutualism

(2008) J. J. Scott et al.   SCIENCE