Development of a high-throughput SNP marker set by transcriptome sequencing to accelerate genetic background selection in Brassica rapa

Development of Polymorphic Genic SSR Markers by Transcriptome Sequencing in the Welsh Onion (Allium fistulosum L.)

(2015) Liuyi Yang et al.   Applied Sciences-Basel

Single Nucleotide Polymorphism Marker Discovery from Transcriptome Sequencing for Marker-assisted Backcrossing in Capsicum

(2014) Jin-Ho Kang et al.   Korean Journal of Horticultural Science & Technology

The first Illumina-based de novo transcriptome sequencing and analysis of pumpkin (Cucurbita moschata Duch.) and SSR marker development

(2014) Tingquan Wu et al.   MOLECULAR BREEDING

Molecular marker information from de novo assembled transcriptomes of chilli pepper (Capsicum annuum L.) varieties based on next-generation sequencing technology

(2014) Yul-Kyun Ahn et al.   Plant Genetic Resources-Characterization and Utilization

RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping

(2013) Kumar Paritosh et al.   BMC GENOMICS

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa

(2013) Chaobo Tong et al.   BMC GENOMICS

Transcriptome profile analysis of young floral buds of fertile and sterile plants from the self-pollinated offspring of the hybrid between novel restorer line NR1 and Nsa CMS line in Brassica napus

(2013) Xiaohong Yan et al.   BMC GENOMICS

The okra (Abelmoschus esculentus) transcriptome as a source for gene sequence information and molecular markers for diversity analysis

(2013) Roland Schafleitner et al.   GENE

De Novo Transcriptome of Brassica juncea Seed Coat and Identification of Genes for the Biosynthesis of Flavonoids

(2013) Xianjun Liu et al.   PLoS One

Conspecificity of two morphologically distinct calcified red algae from the northwest Pacific Ocean: Galaxaura pacifica and G. filamentosa (Galaxauraceae, Rhodophyta)

(2013) Shao-Lun Liu et al.   Botanical Studies

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Transcriptome analysis of stem development in the tumourous stem mustard Brassica juncea var. tumida Tsen et Lee by RNA sequencing

(2012) Quan Sun et al.   BMC PLANT BIOLOGY

Development of EST database and transcriptome analysis in the leaves of Brassica rapa using a newly developed pipeline

(2012) Vignesh Dhandapani et al.   Genes & Genomics

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

Development of InDel markers for Brassica rapa based on whole-genome re-sequencing

(2012) Bo Liu et al.   THEORETICAL AND APPLIED GENETICS

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

(2011) Massimo Iorizzo et al.   BMC GENOMICS

A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly

(2011) Yan Wang et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Transcriptome Profiling of Dehydration Stress in the Chinese Cabbage (Brassica rapa L. ssp. pekinensis) by Tag Sequencing

(2011) Shuancang Yu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptome analysis and SNP/SSR marker information of red pepper variety YCM334 and Taean

(2011) Fu-Hao Lu et al.   SCIENTIA HORTICULTURAE

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

(2010) Jacob E. Crawford et al.   PLoS One

SNP identification in crop plants

(2009) Martin W Ganal et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide discovery of DNA polymorphism in Brassica rapa

(2009) Soomin Park et al.   MOLECULAR GENETICS AND GENOMICS

Double mutations in eIF4E and eIFiso4E confer recessive resistance to Chilli veinal mottle virus in pepper

(2009) JeeNa Hwang et al.   MOLECULES AND CELLS

Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome

(2008) Hyun-Jin Kim et al.   BMC PLANT BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS