Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

Ocular Findings in Infants With Microcephaly Associated With Presumed Zika Virus Congenital Infection in Salvador, Brazil

(2016) Bruno de Paula Freitas et al.   JAMA Ophthalmology

DiagnosingBalamuthia mandrillarisEncephalitis With Metagenomic Deep Sequencing

(2015) Michael R. Wilson et al.   ANNALS OF NEUROLOGY

Genomic characterization of a persistent rubella virus from a case of Fuch’ uveitis syndrome in a 73 year old man

(2015) Emily Abernathy et al.   JOURNAL OF CLINICAL VIROLOGY

Rubella

(2015) Nathaniel Lambert et al.   LANCET

Persistence of Ebola Virus in Ocular Fluid during Convalescence

(2015) Jay B. Varkey et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evolutionary analysis of rubella viruses in mainland China during 2010–2012: endemic circulation of genotype 1E and introductions of genotype 2B

(2015) Zhen Zhu et al.   Scientific Reports

Twenty-Eight Years of Poliovirus Replication in an Immunodeficient Individual: Impact on the Global Polio Eradication Initiative

(2015) Glynis Dunn et al.   PLoS Pathogens

Phylogenetic analysis of rubella viruses identified in Uganda, 2003-2012

(2014) Prossy Namuwulya et al.   JOURNAL OF MEDICAL VIROLOGY

Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

(2014) Michael R. Wilson et al.   NEW ENGLAND JOURNAL OF MEDICINE

Use of a Comprehensive Polymerase Chain Reaction System for Diagnosis of Ocular Infectious Diseases

(2013) Sunao Sugita et al.   OPHTHALMOLOGY

Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009

(2013) Emily Abernathy et al.   Virology Journal

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

(2013) J. Graham Ruby et al.   G3-Genes Genomes Genetics

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

In-Depth Investigation of Archival and Prospectively Collected Samples Reveals No Evidence for XMRV Infection in Prostate Cancer

(2012) Deanna Lee et al.   PLoS One

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Evidence Used to Support the Achievement and Maintenance of Elimination of Rubella and Congenital Rubella Syndrome in the United States

(2011) Susan E. Reef et al.   JOURNAL OF INFECTIOUS DISEASES

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

BLAST-EXPLORER helps you building datasets for phylogenetic analysis

(2010) Alexis Dereeper et al.   BMC EVOLUTIONARY BIOLOGY

Fuchs Heterochromic Iridocyclitis—Syndrome, Disease, or Both?

(2009) Emmett T. Cunningham et al.   AMERICAN JOURNAL OF OPHTHALMOLOGY

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH