Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

Fibroblast VEGF-receptor 1 expression as molecular target in periodontitis

(2016) Mitsuhiro Ohshima et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers

(2015) Bogumil Kaczkowski et al.   CANCER RESEARCH

Direct conversion of human fibroblasts into functional osteoblasts by defined factors

(2015) Kenta Yamamoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential knockdown of TGF-β ligands in a three-dimensional co-culture tumor- stromal interaction model of lung cancer

(2014) Masafumi Horie et al.   BMC CANCER

Gingival Tissue Transcriptomes Identify Distinct Periodontitis Phenotypes

(2014) M. Kebschull et al.   JOURNAL OF DENTAL RESEARCH

An atlas of active enhancers across human cell types and tissues

(2014) Robin Andersson et al.   NATURE

A promoter-level mammalian expression atlas

(2014)   NATURE

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

(2014) Jessica Severin et al.   NATURE BIOTECHNOLOGY

Runx2-I Isoform Contributes to Fetal Bone Formation Even in the Absence of Specific N-Terminal Amino Acids

(2014) Hideaki Okura et al.   PLoS One

Time to take periodontitis seriously

(2014) I. L. C. Chapple   BMJ-British Medical Journal

Characterization of human lung cancer-associated fibroblasts in three-dimensional in vitro co-culture model

(2012) Masafumi Horie et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Lipopolysaccharide extracted from Porphyromonas gingivalis induces DNA hypermethylation of runt-related transcription factor 2 in human periodontal fibroblasts

(2012) Osamu Uehara et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

Gene Expression Profiles in Paired Gingival Biopsies from Periodontitis-Affected and Healthy Tissues Revealed by Massively Parallel Sequencing

(2012) Haleh Davanian et al.   PLoS One

Unamplified cap analysis of gene expression on a single-molecule sequencer

(2011) M. Kanamori-Katayama et al.   GENOME RESEARCH

Gingival and dermal fibroblasts: Their similarities and differences revealed from gene expression

(2011) Katsumi Ebisawa et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Altered gene expression in leukocyte transendothelial migration and cell communication pathways in periodontitis-affected gingival tissues

(2011) D. Abe et al.   JOURNAL OF PERIODONTAL RESEARCH

Porphyromonas gingivalis Lipids Inhibit Osteoblastic Differentiation and Function

(2010) Y.-H. Wang et al.   INFECTION AND IMMUNITY

Binding characteristics of the osteoarthritis-associated protein asporin

(2010) Ikuyo Kou et al.   JOURNAL OF BONE AND MINERAL METABOLISM

TGF-β Signaling in Gingival Fibroblast-Epithelial Interaction

(2010) M. Ohshima et al.   JOURNAL OF DENTAL RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Dose-Dependent Effects ofRunx2on Bone Development

(2009) Shiqin Zhang et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The matricellular functions of small leucine-rich proteoglycans (SLRPs)

(2009) Rosetta Merline et al.   Journal of Cell Communication and Signaling

In Vitro Characterization of the Cytokine Profile of the Epithelial Cell Rests of Malassez

(2008) Mitsuhiro Ohshima et al.   JOURNAL OF PERIODONTOLOGY