Article
Endocrinology & Metabolism
Ji-Yoon Choi, Yun Sun Lee, Da Mi Shim, Sung Wook Seo
Summary: The study investigates the role of PTCH1 in bone metastasis and suggests that PTCH1 may be an important regulator of cancer cell invasion. Knockdown of PTCH1 decreases anchorage-independent growth and metastatic potential of non-small cell lung cancer cells.
Article
Medicine, General & Internal
Yi-Han Zuo, Wei-Na Gao, Ya-Jia Xie, Sheng-Yong Yang, Jin-Tai Zhou, Hai-Hai Liang, Xing-Xing Fan
Summary: PKC delta is identified as a critical factor in the non-inflamed tumor microenvironment (TME) of EGFR-mutated lung cancer. Inhibition of PKC delta enhances the infiltration of immune cells into tumors and increases the sensitivity of tumors to immune checkpoint blockade therapy.
Article
Medicine, Research & Experimental
Wei-Hao Li, Kai Huang, Feng-Biao Wen, Guang-Hui Cui, Hai-Zhou Guo, Song Zhao
Summary: The study reveals the role of PLOD3 and PKC delta in the progression of non-small cell lung cancer (NSCLC). Silencing PLOD3 activates the PKC delta/CDK1/LIMD1 signaling pathway, leading to the prevention of NSCLC progression and providing a potential target for NSCLC treatment.
LABORATORY INVESTIGATION
(2022)
Article
Pharmacology & Pharmacy
Wuxiyar Otkur, Xiaolong Liu, Huan Chen, Siyi Li, Ting Ling, Hanchen Lin, Renyu Yang, Tian Xia, Huan Qi, Hai-Long Piao
Summary: This study reveals that GPR35 plays a pro-cancer role in colorectal cancer (CRC). By using the antagonist CID-2745687 (CID), it was found that inhibiting GPR35 can reduce cell proliferation and anchorage-independent growth of CRC cells, and decrease the activity of YAP/TAZ. Moreover, the high expression level of GPR35 is positively correlated with the high activity of YAP/TAZ, which can be disrupted by CID.
FRONTIERS IN PHARMACOLOGY
(2023)
Article
Oncology
Scott Haston, Estela Gonzalez-Gualda, Samir Morsli, Jianfeng Ge, Virinder Reen, Alexander Calderwood, Ilias Moutsopoulos, Leonidas Panousopoulos, Polina Deletic, Gabriela Carreno, Romain Guiho, Saba Manshaei, Jose Mario Gonzalez-Meljem, Hui Yuan Lim, Daniel J. Simpson, Jodie Birch, Husayn A. Pallikonda, Tamir Chandra, David Macias, Gary J. Doherty, Doris M. Rassl, Robert C. Rintoul, Massimo Signore, Irina Mohorianu, Arne N. Akbar, Jesus Gil, Daniel Munoz-Espin, Juan Pedro Martinez-Barbera
Summary: The accumulation of senescent cells in the tumor microenvironment can promote tumorigenesis through the senescence-associated secretory phenotype (SASP). Macrophages and endothelial cells are the predominant senescent cell types in murine KRAS-driven lung tumors. Through single cell transcriptomics, a population of tumor-associated macrophages with pro-tumorigenic SASP factors and surface proteins is identified. Genetic or senolytic ablation of senescent cells, or macrophage depletion, leads to decreased tumor burden and increased survival in KRAS-driven lung cancer models.
Article
Biochemistry & Molecular Biology
Angelina Huseinovic, Annelieke Jaspers, Annina P. van Splunter, Hanne Sorgard, Saskia M. Wilting, Dorian R. A. Swarts, Ida H. van der Meulen, Victor W. van Beusechem, Renee X. de Menezes, Renske D. M. Steenbergen
Summary: The progression of anchorage-dependent epithelial cells to anchorage-independent growth is a critical feature of malignant transformation. In this study, the researchers used an in vitro model of HPV-induced transformation to investigate the role of microRNAs in anchorage-independent growth. They developed alternative functional screening methods using ultra-low attachment plates and identified a set of microRNAs that consistently suppressed growth. These microRNAs may serve as specific biomarkers for detecting and treating HPV-induced precancerous lesions progressing to invasive cancer.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Siman Gao, Xiangteng Zhao, Lin Hou, Ruining Ma, Jie Zhou, Michael X. Zhu, Si-Jian Pan, Yong Li
Summary: The study reveals that PKC delta is SUMOylated at lysine 473 in its C-terminal catalytic domain, increasing its stability by inhibiting ubiquitination. Additionally, a functional interplay between phosphorylation and SUMOylation of PKC delta strengthens the kinase's function through recruitment of SUMO E2/E3 ligases and the PKC delta kinase. Furthermore, the SUMOylation of PKC delta enhances apoptotic cell death induced by H2O2 by promoting protein stability and phosphorylation through an interdependent interplay of the PTMs.
Review
Biochemistry & Molecular Biology
Han Yeoung Lee, Seung Wan Son, Sokviseth Moeng, Soo Young Choi, Jong Kook Park
Summary: Cancer metastasis is a complex process involving cancer cells acquiring the abilities of anoikis resistance and anchorage-independent cell growth. Noncoding RNAs play a crucial role in regulating cellular events and pathways, contributing to cancer aggressiveness. Researchers are exploring the potential of ncRNA-based therapy for more effective strategies against cancer.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Cell Biology
Cheng-Yao Chiang, Songqing Fan, Hongmei Zheng, Wenjun Guo, Zehan Zheng, Yihua Sun, Chuanqi Zhong, Juan Zeng, Shuaihu Li, Min Zhang, Tian Xiao, Duo Zheng
Summary: This study reveals the tumor-suppressive role of SETD7 in non-small cell lung cancer (NSCLC) by modulating KRAS methylation and degradation. SETD7 interacts with KRAS and methylates KRAS at lysines 182 and 184, leading to KRAS degradation and attenuation of the RAS/MEK/ERK signaling cascade.
Article
Biochemistry & Molecular Biology
Manuela La Montagna, Lei Shi, Peter Magee, Sudhakar Sahoo, Matteo Fassan, Michela Garofalo
Summary: AMP-activated protein kinase (AMPK) plays a critical role in non-small cell lung cancer, with loss of AMPKα potentially promoting KRAS-mediated lung tumorigenesis. Additionally, AMPKα might regulate LDHB activation through modulation of lncRNA KIMAT1. These findings offer a new axis for therapeutic research.
CELL DEATH AND DIFFERENTIATION
(2021)
Article
Chemistry, Medicinal
Jae Seok Yoon, Hyo-Jung Lee, Deok Yong Sim, Eunji Im, Ji Eon Park, Woon Yi Park, Ja Il Koo, Bum Sang Shim, Sung-Hoon Kim
Summary: Moracin D induces apoptosis in DU145 prostate cancer cells through activation of PPAR-gamma/p-PKC-delta signaling and inhibition of p-PKC-alpha. It downregulates caspase-3 and PARP expression, with DU145 cells showing higher sensitivity compared to PC3 cells. This highlights a novel mechanism by which Moracin D exerts its cytotoxic effects in prostate cancer.
PHYTOTHERAPY RESEARCH
(2021)
Review
Pharmacology & Pharmacy
Li Chen, Dazhuo Shi, Ming Guo
Summary: PKC-delta and PKC-epsilon play crucial roles in protecting the myocardium during ischemia/reperfusion injury through their involvement in redox regulation, cell death, Ca2+ overload, and mitochondrial dysfunction.
PHARMACOLOGICAL RESEARCH
(2021)
Article
Multidisciplinary Sciences
Caterina Bartolacci, Cristina Andreani, Goncalo Vale, Stefano Berto, Margherita Melegari, Anna Colleen Crouch, Dodge L. Baluya, George Kemble, Kurt Hodges, Jacqueline Starrett, Katerina Politi, Sandra L. Starnes, Daniele Lorenzini, Maria Gabriela Raso, Luisa M. Solis Soto, Carmen Behrens, Humam Kadara, Boning Gao, Ignacio I. Wistuba, John D. Minna, Jeffrey G. McDonald, Pier Paolo Scaglioni
Summary: Mutant KRAS is associated with poor prognosis in lung cancer and promotes lipid metabolism. This study reveals that fatty acid synthesis is crucial for the viability of mutant KRAS lung cancer cells. Blocking fatty acid synthesis or the Lands cycle promotes ferroptosis, a type of cell death characterized by the accumulation of oxidation-prone phospholipids. Mutant KRAS makes lung cancer cells more reliant on newly synthesized fatty acids.
NATURE COMMUNICATIONS
(2022)
Article
Biochemistry & Molecular Biology
Sana' Hidmi, Hovav Nechushtan, Ehud Razin, Sagi Tshori
Summary: This study discovered the role of Nudt2 in melanoma, showing that it is a tumor-promoting gene that could be targeted for cancer therapy.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Multidisciplinary Sciences
Sally J. Adua, Anna Arnal-Estape, Minghui Zhao, Bowen Qi, Zongzhi Z. Liu, Carolyn Kravitz, Heather Hulme, Nicole Strittmatter, Francesc Lopez-Giraldez, Sampada Chande, Alexandra E. Albert, Mary-Ann Melnick, Bomiao Hu, Katerina Politi, Veronica Chiang, Nicola Colclough, Richard J. A. Goodwin, Darren Cross, Paul Smith, Don X. Nguyen
Summary: The brain acts as a sanctuary site for metastatic cancer cells that can evade systemic therapies. In this study, the authors investigate the functional connection between drug resistance and central nervous system relapse in EGFR-mutant non-small cell lung cancer. They find that the brain microvascular tumor microenvironment is associated with the persistence of malignant cell sub-populations, which can proliferate in the brain as osimertinib-resistant lesions. This resistance is regulated by the RhoA/SRF signaling pathway. The authors also identify a genetic signature associated with osimertinib resistance in brain metastatic lesions.
NATURE COMMUNICATIONS
(2022)
Article
Oncology
Kelsey W. Nassar, Jennifer D. Hintzsche, Stacey M. Bagby, Veronica Espinoza, Christophe Langouet-Astrie, Carol M. Amato, Tugs-Saikhan Chimed, Mayumi Fujita, William Robinson, Aik Choon Tan, Rebecca E. Schweppe
Summary: This study identified acquired oncogenic mutations in NRAS and loss of the tumor suppressor gene CDKN2A in melanoma patients resistant to BRAF/MEK inhibitors. Combination therapy with CDK4/6 and MEK inhibitors showed promising results in overcoming resistance and reducing tumor growth. Inhibition of the cell-cycle and MAPK pathway may represent a valuable strategy for patients with metastatic melanoma resistant to standard therapy.
MOLECULAR CANCER THERAPEUTICS
(2021)
Article
Biochemical Research Methods
Zhaoping Xiong, Minji Jeon, Robert J. Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue K. Zheng, Aik Choon Tan, Xindi Guo, Kristen K. K. Dang, Alex A. Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross Cagan
Summary: The development of safer and more effective drugs is a key challenge in modern medicine. Precision therapeutics and polypharmacology, targeting one or multiple biological targets respectively, are two main approaches for drug development. While multi-targeting drugs can be more effective in addressing disease complexity, computationally predicting molecules with desirable target profiles remains a challenge.
PLOS COMPUTATIONAL BIOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Heather M. Brechbuhl, Mengyu Xie, Etana G. Kopin, Amy L. Han, Kiran Vinod-Paul, Jaime Hagen, Susan Edgerton, Philip Owens, Sharon Sams, Anthony Elias, Carol A. Sartorius, Aik-Choon Tan, Peter Kabos
Summary: The tumor microenvironment plays a crucial role in response and resistance to endocrine therapy in ER-positive breast cancer. The study found that neoadjuvant endocrine therapy alters TME composition, promoting the expansion of less favorable TASC(CDCP1) population associated with TME remodeling and increased immune infiltration supportive of tumor progression.
MOLECULAR CARCINOGENESIS
(2022)
Article
Multidisciplinary Sciences
Marco Napoli, Sarah J. Wu, Bethanie L. Gore, Hussein Abbas, Kyubum Lee, Rahul Checker, Shilpa Dhar, Kimal Rajapakshe, Aik Choon Tan, Min Gyu Lee, Cristian Coarfa, Elsa R. Flores
Summary: Distinct lung stem cells regulated by increment Np63 play a role in the development of both lung adenocarcinoma and squamous cell carcinoma through the regulation of a common landscape of enhancer-associated genes, including BCL9L.
NATURE COMMUNICATIONS
(2022)
Article
Oncology
Ahmad A. Tarhini, Sandra J. Lee, Aik-Choon Tan, Issam M. El Naqa, F. Stephen Hodi, Lisa H. Butterfield, William A. LaFramboise, Walter J. Storkus, Arivarasan D. Karunamurthy, Jose R. Conejo-Garcia, Patrick Hwu, Howard Streicher, Vernon K. Sondak, John M. Kirkwood
Summary: Melanoma of unknown primary (MUP) has a significantly better prognosis and shows evidence of significantly enhanced immune activation within the tumor microenvironment and the circulation in high-risk melanoma patients.
JOURNAL FOR IMMUNOTHERAPY OF CANCER
(2022)
Article
Biology
Alyssa Obermayer, Li Dong, Qianqian Hu, Michael Golden, Jerald D. D. Noble, Paulo Rodriguez, Timothy J. J. Robinson, Mingxiang Teng, Aik-Choon Tan, Timothy I. I. Shaw
Summary: This paper presents a R Shiny framework called DRPPM-EASY for integrative multi-omics analysis of cancer datasets. The framework provides a user-friendly interface for exploring and integrating various omics data, reducing the need for computational experience. By analyzing transcriptomic and proteomic data, the authors identified cancer cell proliferative features associated with USP7 gene knockout and disruption of protein degradation and spliceosome. Additionally, they developed an extension called DRPPM-EASY-CCLE with preloaded cancer cell line data for sample querying and phenotype assignment.
Article
Medicine, Research & Experimental
Mariam Saad, Sandra J. Lee, Aik Choon Tan, Issam M. El Naqa, F. Stephen Hodi, Lisa H. Butterfield, William A. LaFramboise, Walter Storkus, Arivarasan D. Karunamurthy, Jose Conejo-Garcia, Patrick Hwu, Howard Streicher, Vernon K. Sondak, John M. Kirkwood, Ahmad A. Tarhini
Summary: This study found that female patients had better clinical response when receiving ipilimumab and high-dose IFN alpha as adjuvant therapy, and they showed stronger immune activation in the tumor microenvironment and circulation.
JOURNAL OF TRANSLATIONAL MEDICINE
(2022)
Article
Biochemistry & Molecular Biology
Xiang Liu, Bo Zhao, Timothy Shaw, Brooke L. Fridley, Derek R. Duckett, Aik Choon Tan, Mingxiang Teng
Summary: This study proposes a novel computational method for identifying differential SEs by considering the activities and positions of constituent enhancers. This method not only takes into account the overall activity changes, but also discovers four new classes of differential SEs with distinct enhancer structural alterations. Compared to existing methods, this approach shows improved identification of differential SEs and better discernment of cell-type-specific SE activity and functional interpretation.
NUCLEIC ACIDS RESEARCH
(2022)
Correction
Multidisciplinary Sciences
Marco Napoli, Sarah J. Wu, Bethanie L. Gore, Hussein A. Abbas, Kyubum Lee, Rahul Checker, Shilpa Dhar, Kimal Rajapakshe, Aik Choon Tan, Min Gyu Lee, Cristian Coarfa, Elsa R. Flores
NATURE COMMUNICATIONS
(2022)
Article
Biochemistry & Molecular Biology
Samuel Coleman, Mengyu Xie, Ahmad A. Tarhini, Aik Choon Tan
Summary: Immunotherapy has made significant advancements in the treatment of melanoma, but there is still a need for predictive biomarkers to select patients for immune checkpoint inhibitors (ICIs) therapy. This study evaluated previously published predictive biomarkers based on gene expression signatures and found that biomarkers related to IFN-gamma-responsive genes, T and B cell markers, and chemokines in the tumor immune microenvironment can predict the response to ICIs. The study also showed that these biomarkers are more predictive in on-treatment samples compared to pretreatment samples in metastatic melanoma.
MOLECULAR CARCINOGENESIS
(2023)
Article
Cell Biology
Devin M. Boe, Holly J. Hulsebus, Kevin M. Najarro, Juliet E. Mullen, Hyunmin Kim, Aik Choon Tan, Rachel H. McMahan, Elizabeth J. Kovacs
Summary: As individuals age, alveolar macrophages (AMs) in the lower airways undergo various changes in phenotype and function, exhibiting characteristics of cellular senescence and reduced response to physiological stressors. These age-related alterations, potentially involving glucocorticoid-regulated genes, could interfere with AMs' responses to stressors and contribute to their dysfunction during healthy aging.
JOURNAL OF LEUKOCYTE BIOLOGY
(2022)
Article
Cell Biology
Zachary J. Thompson, Jamie K. Teer, Jiannong Li, Zhihua Chen, Eric A. Welsh, Yonghong Zhang, Noura Ayoubi, Zeynep Eroglu, Aik Choon Tan, Keiran S. M. Smalley, Yian Ann Chen
Summary: DRepMel is a Shiny app developed to provide rational combination treatment predictions for melanoma patients using a multi-omics drug repurposing computational approach. It offers robust predictions based on whole exome sequencing and RNA-seq data, and also identifies potential treatment effects on the tumor microenvironment using single-cell RNA-seq data.
Article
Genetics & Heredity
Min Hu, Samuel Coleman, Muhammad Zaki Hidayatullah Fadlullah, Daniel Spakowicz, Christine H. Chung, Aik Choon Tan
Summary: Patients with human papillomavirus-negative head and neck squamous cell carcinoma (HPV-negative HNSCC) have worse outcomes than HPV-positive HNSCC. In our study, we found that microbial signatures can distinguish Hypoxia/Immune phenotypes similar to gene expression signatures in molecularly classified tumor groups. Additionally, we identified three highly-correlated microbes that are crucial for immunotherapy response in immune processes. The co-abundance of these three microbes significantly affects the survival of patients in a molecularly heterogenous group.
Meeting Abstract
Oncology
Ahmad A. Tarhini, Aik Choon Tan, Mengyu Xie, Issam El Naqa, Payman Ghasemi Saghand, Donghai Dai, James Lin Chen, Aakrosh Ratan, Martin McCarter, John D. Carpten, Howard Colman, Alexandra Ikeguchi, Abhishek Tripathi, Igor Puzanov, Susanne M. Arnold, Michelle L. Churchman, Patrick Hwu, Jose Conejo-Garcia, William S. Dalton, George J. Weiner
JOURNAL OF CLINICAL ONCOLOGY
(2022)
Meeting Abstract
Oncology
Payman Ghasemi Saghand, Issam El Naqa, Aik Choon Tan, Mengyu Xie, Donghai Dai, James Lin Chen, Aakrosh Ratan, Martin McCarter, John D. Carpten, Harsh Shah, Alexandra Ikeguchi, Abhishek Tripathi, Igor Puzanov, Susanne M. Arnold, Michelle L. Churchman, Patrick Hwu, Jose Conejo-Garcia, William S. Dalton, George J. Weiner, Ahmad A. Tarhini
JOURNAL OF CLINICAL ONCOLOGY
(2022)