moveHMM: anRpackage for the statistical modelling of animal movement data using hidden Markov models

Sex-specific and individual preferences for hunting strategies in white sharks

(2016) Alison V. Towner et al.   FUNCTIONAL ECOLOGY

ctmm: anrpackage for analyzing animal relocation data as a continuous-time stochastic process

(2016) Justin M. Calabrese et al.   Methods in Ecology and Evolution

Nonparametric inference in hidden Markov models using P-splines

(2015) Roland Langrock et al.   BIOMETRICS

depmixS4: AnRPackage for Hidden Markov Models

(2015) Ingmar Visser et al.   Journal of Statistical Software

Multi-State Models for Panel Data: ThemsmPackage forR

(2015) Christopher H. Jackson   Journal of Statistical Software

Rcpp: SeamlessRandC++Integration

(2015) Dirk Eddelbuettel et al.   Journal of Statistical Software

Using mixed hidden Markov models to examine behavioral states in a cooperatively breeding bird

(2014) Ann E. McKellar et al.   BEHAVIORAL ECOLOGY

Using hidden Markov models to infer vessel activities in the snow crab (Chionoecetes opilio) fixed gear fishery and their application to catch standardization

(2014) Colin Charles et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Hidden semi-Markov models reveal multiphasic movement of the endangered Florida panther

(2014) Madelon van de Kerk et al.   JOURNAL OF ANIMAL ECOLOGY

State-space models for bio-loggers: A methodological road map

(2012) I.D. Jonsen et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions

(2012) Roland Langrock et al.   ECOLOGY

A Multivariate Hidden Markov Model for the Identification of Sea Regimes from Incomplete Skewed and Circular Time Series

(2012) J. Bulla et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Comparative analysis of methods for inferring successful foraging areas from Argos and GPS tracking data

(2012) AC Dragon et al.   MARINE ECOLOGY PROGRESS SERIES

Animal-Borne Acoustic Transceivers Reveal Patterns of at-Sea Associations in an Upper-Trophic Level Predator

(2012) Damian C. Lidgard et al.   PLoS One

A hidden Markov model approach for determining vessel activity from vessel monitoring system data

(2011) David Peel et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Hidden Markov models with arbitrary state dwell-time distributions

(2010) R. Langrock et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Classifying movement behaviour in relation to environmental conditions using hidden Markov models

(2009) Toby A. Patterson et al.   JOURNAL OF ANIMAL ECOLOGY

Random walk models in biology

(2008) E. A Codling et al.   Journal of the Royal Society Interface