Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes

(2016) Zachary T. Aanderud et al.   Frontiers in Microbiology

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fortnightly Tidal Modulations Affect Net Community Production in a Mesotidal Estuary

(2014) Nicholas J. Nidzieko et al.   Estuaries and Coasts

Cable bacteria associated with long-distance electron transport in New England salt marsh sediment

(2014) Steffen Larsen et al.   Environmental Microbiology Reports

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Nutrient enrichment, biodiversity loss, and consequent declines in ecosystem productivity

(2013) F. Isbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tidal and Groundwater Fluxes to a Shallow, Microtidal Estuary: Constraining Inputs Through Field Observations and Hydrodynamic Modeling

(2012) Neil K. Ganju et al.   Estuaries and Coasts

Chronic Nutrient Enrichment Increases the Density and Biomass of the Mudsnail, Nassarius obsoletus

(2012) David Samuel Johnson et al.   Estuaries and Coasts

Microbial composition affects the functioning of estuarine sediments

(2012) Heather E Reed et al.   ISME Journal

Coastal eutrophication as a driver of salt marsh loss

(2012) Linda A. Deegan et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Effects of nitrogen deposition and empirical nitrogen critical loads for ecoregions of the United States

(2011) Linda H. Pardo et al.   ECOLOGICAL APPLICATIONS

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

(2011) Elizabeth A Ottesen et al.   ISME Journal

Increased supply of ambient nitrogen has minimal effect on salt marsh bacterial production

(2011) J. L. Bowen et al.   LIMNOLOGY AND OCEANOGRAPHY

The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments

(2011) Ketil Koop-Jakobsen et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extraction of mRNA from Soil

(2010) C. Mettel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation

(2010) Jack A. Gilbert et al.   PLoS One

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Genome sequence ofDesulfobacterium autotrophicumHRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

(2009) Axel W. Strittmatter et al.   ENVIRONMENTAL MICROBIOLOGY

ECOLOGY: Controlling Eutrophication: Nitrogen and Phosphorus

(2009) D. J. Conley et al.   SCIENCE

A method for estimating pore water drainage from marsh soils using rainfall and well records

(2008) Leonard Robert Gardner et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE