标题
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
作者
关键词
-
出版物
Nature Communications
Volume 7, Issue -, Pages 10613
出版商
Springer Nature
发表日期
2016-02-03
DOI
10.1038/ncomms10613
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae
- (2015) Isabelle Pagnier et al. Biology Direct
- Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
- (2015) Cindy J. Castelle et al. CURRENT BIOLOGY
- Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense
- (2015) Edze R. Westra et al. CURRENT BIOLOGY
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- CRISPR adaptation biases explain preference for acquisition of foreign DNA
- (2015) Asaf Levy et al. NATURE
- Costs of CRISPR-Cas-mediated resistance inStreptococcus thermophilus
- (2015) Pedro F. Vale et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus
- (2015) David Paez-Espino et al. mBio
- Diverse uncultivated ultra-small bacterial cells in groundwater
- (2015) Birgit Luef et al. Nature Communications
- The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
- (2015) William C. Nelson et al. Frontiers in Microbiology
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- BREX is a novel phage resistance system widespread in microbial genomes
- (2014) T. Goldfarb et al. EMBO JOURNAL
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2014) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- Classification and evolution of type II CRISPR-Cas systems
- (2014) Krzysztof Chylinski et al. NUCLEIC ACIDS RESEARCH
- Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
- (2014) Xuesong He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary Dynamics of the Prokaryotic Adaptive Immunity System CRISPR-Cas in an Explicit Ecological Context
- (2013) J. Iranzo et al. JOURNAL OF BACTERIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- IMG 4 version of the integrated microbial genomes comparative analysis system
- (2013) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
- (2013) R. S. Kantor et al. mBio
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
- (2012) K. C. Wrighton et al. SCIENCE
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
- (2011) K. S. Makarova et al. JOURNAL OF BACTERIOLOGY
- Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere
- (2011) M. Krupovic et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- PHAST: A Fast Phage Search Tool
- (2011) Y. Zhou et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer inPyrococcus furiosus
- (2010) M. C. Portillo et al. JOURNAL OF APPLIED GENETICS
- The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
- (2010) Josiane E. Garneau et al. NATURE
- TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea
- (2010) Yucheng Shao et al. NUCLEIC ACIDS RESEARCH
- Self-targeting by CRISPR: gene regulation or autoimmunity?
- (2010) Adi Stern et al. TRENDS IN GENETICS
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Comparative analysis of CRISPR loci in lactic acid bacteria genomes
- (2008) Philippe Horvath et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Genome Sequence of the Fish Pathogen Renibacterium salmoninarum Suggests Reductive Evolution away from an Environmental Arthrobacter Ancestor
- (2008) G. D. Wiens et al. JOURNAL OF BACTERIOLOGY
- CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
- (2007) Rotem Sorek et al. NATURE REVIEWS MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now