Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study

Exposure to aflatoxin B1in uterois associated with DNA methylation in white blood cells of infants in The Gambia

(2015) Hector Hernandez-Vargas et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Characterising the epigenome as a key component of the fetal exposome in evaluating in utero exposures and childhood cancer risk

(2015) A. Ghantous et al.   MUTAGENESIS

Generation of functionally distinct isoforms of PTBP3 by alternative splicing and translation initiation

(2015) L.-Y. Tan et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Hypomethylation of smoking-related genes is associated with future lung cancer in four prospective cohorts

(2015) Francesca Fasanelli et al.   Nature Communications

Association of DNA methylation with age, gender, and smoking in an Arab population

(2015) Shaza B Zaghlool et al.   Clinical Epigenetics

Independent genomewide screens identify the tumor suppressor VTRNA2-1 as a human epiallele responsive to periconceptional environment

(2015) Matt J Silver et al.   GENOME BIOLOGY

Prenatal exposure to maternal smoking and offspring DNA methylation across the lifecourse: findings from the Avon Longitudinal Study of Parents and Children (ALSPAC)

(2015) Rebecca C. Richmond et al.   HUMAN MOLECULAR GENETICS

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

Dynamic imbalance between cancer cell subpopulations induced by Transforming Growth Factor Beta (TGF-β) is associated with a DNA methylome switch

(2014) Marion Martin et al.   BMC GENOMICS

The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women

(2014) Meeshanthini V Dogan et al.   BMC GENOMICS

Maternal Smoking and DNA Methylation in Newborns: In Utero Effect or Epigenetic Inheritance?

(2014) B. R. Joubert et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation

(2014) Loukia G Tsaprouni et al.   Epigenetics

Aging and epigenetic drift: a vicious cycle

(2014) Jean-Pierre Issa   JOURNAL OF CLINICAL INVESTIGATION

Prenatal Tobacco Smoke Exposure Is Associated with Childhood DNA CpG Methylation

(2014) Carrie V. Breton et al.   PLoS One

Current Genetics and Epigenetics of Smoking/Tobacco-Related Cardiovascular Disease

(2013) Lutz P. Breitling   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Batch Effects and Pathway Analysis: Two Potential Perils in Cancer Studies Involving DNA Methylation Array Analysis

(2013) K. N. Harper et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray

(2013) Yi-an Chen et al.   Epigenetics

Smoke-related DNA methylation changes in the etiology of human disease

(2013) Welisane Besingi et al.   HUMAN MOLECULAR GENETICS

From promises to practical strategies in epigenetic epidemiology

(2013) Jonathan Mill et al.   NATURE REVIEWS GENETICS

Tobacco Smoking Leads to Extensive Genome-Wide Changes in DNA Methylation

(2013) Sonja Zeilinger et al.   PLoS One

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data

(2012) Andrew E. Teschendorff et al.   BIOINFORMATICS

DNA methylation arrays as surrogate measures of cell mixture distribution

(2012) Eugene Houseman et al.   BMC BIOINFORMATICS

DNA methylation profiling in breast cancer discordant identical twins identifies DOK7 as novel epigenetic biomarker

(2012) H. Heyn et al.   CARCINOGENESIS

450K Epigenome-Wide Scan Identifies Differential DNA Methylation in Newborns Related to Maternal Smoking during Pregnancy

(2012) Bonnie R. Joubert et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

A new function of ROD1 in nonsense-mediated mRNA decay

(2012) T.F. Brazão et al.   FEBS LETTERS

Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome

(2012) Emily S. Wan et al.   HUMAN MOLECULAR GENETICS

Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking

(2012) Natalie S. Shenker et al.   HUMAN MOLECULAR GENETICS

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

(2012) Andrew E Jaffe et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation

(2012) Andrew E Teschendorff et al.   Genome Medicine

Tobacco-Smoking-Related Differential DNA Methylation: 27K Discovery and Replication

(2011) Lutz P. Breitling et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Allelic methylation levels of the noncoding VTRNA2-1 located on chromosome 5q31.1 predict outcome in AML

(2011) M. B. Treppendahl et al.   BLOOD

Epigenetic mechanisms and cancer: An interface between the environment and the genome

(2011) Zdenko Herceg et al.   Epigenetics

High density DNA methylation array with single CpG site resolution

(2011) Marina Bibikova et al.   GENOMICS

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

Epigenome-wide association studies for common human diseases

(2011) Vardhman K. Rakyan et al.   NATURE REVIEWS GENETICS

New concepts of old epigenetic phenomena and their implications for selecting specific cell populations for epigenomic research

(2011) Zdenko Herceg et al.   Epigenomics

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

(2010) Pan Du et al.   BMC BIOINFORMATICS

Intergenic, gene terminal, and intragenic CpG islands in the human genome

(2010) Yulia A Medvedeva et al.   BMC GENOMICS

AIRAP, a New Human Heat Shock Gene Regulated by Heat Shock Factor 1

(2010) Antonio Rossi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Conserved role of intragenic DNA methylation in regulating alternative promoters

(2010) Alika K. Maunakea et al.   NATURE

The Search for Endogenous Activators of the Aryl Hydrocarbon Receptor

(2007) Linh P. Nguyen et al.   CHEMICAL RESEARCH IN TOXICOLOGY