The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements
出版年份 2016 全文链接
标题
The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements
作者
关键词
K562 Cell, Electrophoretic Mobility Shift Assay, CTCF Binding, CTCF Binding Site, Knock Down
出版物
Epigenetics & Chromatin
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-09-03
DOI
10.1186/s13072-016-0084-2
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- The genomic characteristics and cellular origin of chromothripsis
- (2016) Zuzana Storchová et al. CURRENT OPINION IN CELL BIOLOGY
- Systematic identification of genes with a cancer-testis expression pattern in 19 cancer types
- (2016) Cheng Wang et al. Nature Communications
- Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells
- (2016) Sabine Klawitter et al. Nature Communications
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development
- (2015) Walfred W.C. Tang et al. CELL
- Genomic discovery of potent chromatin insulators for human gene therapy
- (2015) Mingdong Liu et al. NATURE BIOTECHNOLOGY
- Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma
- (2015) Nemanja Rodić et al. NATURE MEDICINE
- Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
- (2015) Carlos Gómez-Marín et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of DNA Methylation in Modulating Transcription Factor Occupancy
- (2015) Matthew T. Maurano et al. Cell Reports
- Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs
- (2015) Andrew Paul Hutchins et al. Science Bulletin
- Different Effects of BORIS/CTCFL on Stemness Gene Expression, Sphere Formation and Cell Survival in Epithelial Cancer Stem Cells
- (2015) Loredana Alberti et al. PLoS One
- Mechanisms of transcriptional dysregulation in repeat expansion disorders
- (2014) Matthias Groh et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Narrowing the localization of the region breakpoint in most frequent Robertsonian translocations
- (2014) Malgorzata Jarmuz-Szymczak et al. CHROMOSOME RESEARCH
- Repeat associated non-ATG (RAN) translation: new starts in microsatellite expansion disorders
- (2014) John Douglas Cleary et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos
- (2014) D. M. Messerschmidt et al. GENES & DEVELOPMENT
- Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
- (2014) N. Stong et al. GENOME RESEARCH
- Mislocalization of the Centromeric Histone Variant CenH3/CENP-A in Human Cells Depends on the Chaperone DAXX
- (2014) Nicolas Lacoste et al. MOLECULAR CELL
- Genomics: Something to swing about
- (2014) Michael J. O'Neill et al. NATURE
- An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
- (2014) Frank M. J. Jacobs et al. NATURE
- Gibbon genome and the fast karyotype evolution of small apes
- (2014) Lucia Carbone et al. NATURE
- Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads
- (2014) Valentí Moncunill et al. NATURE BIOTECHNOLOGY
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin
- (2014) Oliver Weth et al. NUCLEIC ACIDS RESEARCH
- An Evaluation of a SVA Retrotransposon in the FUS Promoter as a Transcriptional Regulator and Its Association to ALS
- (2014) Abigail L. Savage et al. PLoS One
- High Expression of hTERT and Stemness Genes in BORIS/CTCFL Positive Cells Isolated from Embryonic Cancer Cells
- (2014) Loredana Alberti et al. PLoS One
- Recombination initiation maps of individual human genomes
- (2014) F. Pratto et al. SCIENCE
- Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
- (2014) Petra C Schwalie et al. GENOME BIOLOGY
- SVA retrotransposon insertion-associated deletion represents a novel mutational mechanism underlying large genomic copy number changes with non-recurrent breakpoints
- (2014) Julia Vogt et al. GENOME BIOLOGY
- Retrotransposition in tumors and brains
- (2014) John L Goodier Mobile DNA
- D4Z4as a prototype of CTCF and lamins-dependent insulator in human cells
- (2014) Alexandre Ottaviani et al. Nucleus
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Functional impact of the human mobilome
- (2013) Timothy D Babatz et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET
- (2013) H. M. Rowe et al. DEVELOPMENT
- Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements
- (2013) C.-Z. Zhang et al. GENES & DEVELOPMENT
- Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing
- (2013) Nicola Crosetto et al. NATURE METHODS
- Modulation of LINE-1 and Alu/SVA Retrotransposition by Aicardi-Goutières Syndrome-Related SAMHD1
- (2013) Ke Zhao et al. Cell Reports
- Active Transposition in Genomes
- (2012) Cheng Ran Lisa Huang et al. Annual Review of Genetics
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
- (2012) Dominic Schmidt et al. CELL
- Active human retrotransposons: variation and disease
- (2012) Dustin C Hancks et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection
- (2012) Zhong Deng et al. EMBO JOURNAL
- Transposon-Derived and Satellite-Derived Repetitive Sequences Play Distinct Functional Roles in Mammalian Intron Size Expansion
- (2012) Dapeng Wang et al. Evolutionary Bioinformatics
- Transcriptional regulation of human-specific SVAF1 retrotransposons by cis-regulatory MAST2 sequences
- (2012) Anastasia A. Zabolotneva et al. GENE
- Widespread plasticity in CTCF occupancy linked to DNA methylation
- (2012) H. Wang et al. GENOME RESEARCH
- The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
- (2012) Andrea H. Horakova et al. HUMAN MOLECULAR GENETICS
- Epigenetic engineering: histone H3K9 acetylation is compatible with kinetochore structure and function
- (2012) J. H. Bergmann et al. JOURNAL OF CELL SCIENCE
- The Minimal Active Human SVA Retrotransposon Requires Only the 5'-Hexamer and Alu-Like Domains
- (2012) D. C. Hancks et al. MOLECULAR AND CELLULAR BIOLOGY
- SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters
- (2012) M. R. H. Estecio et al. MOLECULAR CANCER RESEARCH
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues
- (2012) Gilad Landan et al. NATURE GENETICS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Genome-wide nucleosome positioning during embryonic stem cell development
- (2012) Vladimir B Teif et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8
- (2012) Akiko Nakanishi et al. PLoS One
- Tcra gene recombination is supported by a Tcra enhancer- and CTCF-dependent chromatin hub
- (2012) H.-Y. Shih et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Landscape of Somatic Retrotransposition in Human Cancers
- (2012) E. Lee et al. SCIENCE
- The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner
- (2012) Frank Sleutels et al. Epigenetics & Chromatin
- Tethering of the Conserved piggyBac Transposase Fusion Protein CSB-PGBD3 to Chromosomal AP-1 Proteins Regulates Expression of Nearby Genes in Humans
- (2012) Lucas T. Gray et al. PLoS Genetics
- Epigenetic interplay between mouse endogenous retroviruses and host genes
- (2012) Rita Rebollo et al. GENOME BIOLOGY
- The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite
- (2012) Andrea H Horakova et al. GENOME BIOLOGY
- A repetitive elements perspective in Polycomb epigenetics
- (2012) Valentina Casa et al. Frontiers in Genetics
- Chromatin loops, gene positioning, and gene expression
- (2012) Sjoerd Holwerda et al. Frontiers in Genetics
- Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
- (2011) Philip J. Stephens et al. CELL
- Condensin dysfunction in human cells induces nonrandom chromosomal breaks in anaphase, with distinct patterns for both unique and repeated genomic regions
- (2011) Alexander Samoshkin et al. CHROMOSOMA
- BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer
- (2011) S. Bhan et al. CLINICAL CANCER RESEARCH
- Retrotransposition of marked SVA elements by human L1s in cultured cells
- (2011) Dustin C. Hancks et al. HUMAN MOLECULAR GENETICS
- Transcription Factor BORIS (Brother of the Regulator of Imprinted Sites) Directly Induces Expression of a Cancer-Testis Antigen, TSP50, through Regulated Binding of BORIS to the Promoter
- (2011) Natsuki Kosaka-Suzuki et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- CTCF-mediated functional chromatin interactome in pluripotent cells
- (2011) Lusy Handoko et al. NATURE GENETICS
- The non-autonomous retrotransposon SVA is trans -mobilized by the human LINE-1 protein machinery
- (2011) Julija Raiz et al. NUCLEIC ACIDS RESEARCH
- LINE-1 Hypomethylation During Primary Colon Cancer Progression
- (2011) Eiji Sunami et al. PLoS One
- Aberrant Overexpression of Satellite Repeats in Pancreatic and Other Epithelial Cancers
- (2011) D. T. Ting et al. SCIENCE
- A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
- (2011) Chip Stewart et al. PLoS Genetics
- Identification of human-specific transcript variants induced by DNA insertions in the human genome
- (2010) Dong Seon Kim et al. BIOINFORMATICS
- Jumping genes and epigenetics: Towards new species
- (2010) Rita Rebollo et al. GENE
- Expression of a Testis-Specific Form of Gal3st1 (CST), a Gene Essential for Spermatogenesis, Is Regulated by the CTCF Paralogous Gene BORIS
- (2010) T. Suzuki et al. MOLECULAR AND CELLULAR BIOLOGY
- seqMINER: an integrated ChIP-seq data interpretation platform
- (2010) Tao Ye et al. NUCLEIC ACIDS RESEARCH
- SVA retrotransposons: Evolution and genetic instability
- (2010) Dustin C. Hancks et al. SEMINARS IN CANCER BIOLOGY
- All y’all need to know ‘bout retroelements in cancer
- (2010) Victoria P. Belancio et al. SEMINARS IN CANCER BIOLOGY
- CTCF regulates the local epigenetic state of ribosomal DNA repeats
- (2010) Suzanne van de Nobelen et al. Epigenetics & Chromatin
- Exon-trapping mediated by the human retrotransposon SVA
- (2009) D. C. Hancks et al. GENOME RESEARCH
- 5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
- (2009) A. Damert et al. GENOME RESEARCH
- DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation
- (2009) T. B. Miranda et al. MOLECULAR CANCER THERAPEUTICS
- The RNA Polymerase Dictates ORF1 Requirement and Timing of LINE and SINE Retrotransposition
- (2009) Emily N. Kroutter et al. PLoS Genetics
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Selective apoptosis of breast cancer cells by siRNA targeting of BORIS
- (2008) Christopher J. Dougherty et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
- Modes of action of the DNA methyltransferase inhibitors azacytidine and decitabine
- (2008) Carlo Stresemann et al. INTERNATIONAL JOURNAL OF CANCER
- The human genome in the LINE of fire
- (2008) R. Cordaux PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- L1 recombination-associated deletions generate human genomic variation
- (2008) K. Han et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PTEN-deficient cancers depend on PIK3CB
- (2008) S. Wee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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