Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
出版年份 2016 全文链接
标题
Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
作者
关键词
Chloroplast, African rice, Phylogenetic, Asian rice, Resequencing, Variation
出版物
Rice
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-10-18
DOI
10.1186/s12284-016-0129-y
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- A chloroplast variation map generated using whole genome re-sequencing of Korean landrace rice reveals phylogenetic relationships amongOryza sativasubspecies
- (2015) Wei Tong et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus
- (2015) Jose Carbonell-Caballero et al. MOLECULAR BIOLOGY AND EVOLUTION
- Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences
- (2015) Peterson W. Wambugu et al. Scientific Reports
- Rice domestication occurred through single origin and multiple introgressions
- (2015) Xuehui Huang et al. Nature Plants
- The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
- (2014) Muhua Wang et al. NATURE GENETICS
- Chloroplast Genome of Novel Rice Germplasm Identified in Northern Australia
- (2014) Marta Brozynska et al. Tropical Plant Biology
- Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
- (2013) Jun-Bo Yang et al. BMC EVOLUTIONARY BIOLOGY
- Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line
- (2013) Svetlana V. Nikiforova et al. MOLECULAR BIOLOGY AND EVOLUTION
- Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree
- (2013) Hannah McPherson et al. BMC ECOLOGY
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
- (2012) Daniel H. Huson et al. SYSTEMATIC BIOLOGY
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- Sequencing of Chloroplast Genome Using Whole Cellular DNA and Solexa Sequencing Technology
- (2012) Jian Wu et al. Frontiers in Plant Science
- Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
- (2011) Shannon C. K. Straub et al. AMERICAN JOURNAL OF BOTANY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Independent Domestication of Asian Rice Followed by Gene Flow from japonica to indica
- (2011) C.-c. Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
- (2011) Xun Xu et al. NATURE BIOTECHNOLOGY
- Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication
- (2011) B.-F. Zhu et al. PLANT PHYSIOLOGY
- Molecular evidence for a single evolutionary origin of domesticated rice
- (2011) J. Molina et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
- Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice
- (2011) Daniel L. E. Waters et al. Ecology and Evolution
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Development of an allele-mining set in rice using a heuristic algorithm and SSR genotype data with least redundancy for the post-genomic era
- (2010) Weiguo Zhao et al. MOLECULAR BREEDING
- The foundation of extranuclear inheritance: plastid and mitochondrial genetics
- (2010) Rudolf Hagemann MOLECULAR GENETICS AND GENOMICS
- Chloroplast genome sequences from total DNA for plant identification
- (2010) Catherine J. Nock et al. PLANT BIOTECHNOLOGY JOURNAL
- Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
- (2010) M. J. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
- (2009) Matthew Parks et al. BMC BIOLOGY
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Selection on grain shattering genes and rates of rice domestication
- (2009) Lin-Bin Zhang et al. NEW PHYTOLOGIST
- Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza
- (2008) Hiroko Takahashi et al. BREEDING SCIENCE
- Genetic control of rice plant architecture under domestication
- (2008) Jian Jin et al. NATURE GENETICS
- The evolving story of rice evolution
- (2008) Duncan A. Vaughan et al. PLANT SCIENCE
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