Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress

Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

(2015) Ali Moumeni et al.   BMC GENOMICS

Molecular phylogenetic study and expression analysis of ATP-binding cassette transporter gene family in Oryza sativa in response to salt stress

(2015) Jayita Saha et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Adoption and economics of alternate wetting and drying water management for irrigated lowland rice

(2015) Rubenito M. Lampayan et al.   FIELD CROPS RESEARCH

Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa)

(2015) R.D.D. Silveira et al.   GENETICS AND MOLECULAR RESEARCH

Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms

(2015) Elena Baldoni et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Roles of ROS and ABA in Systemic Acquired Acclimation

(2015) Ron Mittler et al.   PLANT CELL

Ammonium-induced architectural and anatomical changes with altered suberin and lignin levels significantly change water and solute permeabilities of rice (Oryza sativa L.) roots

(2015) Kosala Ranathunge et al.   PLANTA

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

(2015) Anna Medici et al.   Nature Communications

SlDEAD31, a Putative DEAD-Box RNA Helicase Gene, Regulates Salt and Drought Tolerance and Stress-Related Genes in Tomato

(2015) Mingku Zhu et al.   PLoS One

ABA-dependent and ABA-independent signaling in response to osmotic stress in plants

(2014) Takuya Yoshida et al.   CURRENT OPINION IN PLANT BIOLOGY

PERK–KIPK–KCBP signalling negatively regulates root growth in Arabidopsis thaliana

(2014) Tania V. Humphrey et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide expression analysis of rice ABC transporter family across spatio-temporal samples and in response to abiotic stresses

(2014) Van Ngoc Tuyet Nguyen et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

LcKRP, a cyclin-dependent kinase inhibitor from Lycium chinense, is involved in an ABA-dependent drought stress-signaling pathway

(2014) Chunfeng Guan et al.   PLANT AND SOIL

The multidrug and toxic compound extrusion (MATE) family in plants

(2014) Kojiro Takanashi et al.   Plant Biotechnology

Transcriptomic profiling revealed an important role of cell wall remodeling and ethylene signaling pathway during salt acclimation in Arabidopsis

(2014) Xiaoyan Shen et al.   PLANT MOLECULAR BIOLOGY

Membrane transporters and drought resistance – a complex issue

(2014) Karolina M. Jarzyniak et al.   Frontiers in Plant Science

The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat

(2014) Kazuo Nakashima et al.   Frontiers in Plant Science

The Arabidopsis CDK inhibitor ICK3/KRP5 is rate limiting for primary root growth and promotes growth through cell elongation and endoreduplication

(2013) Bo Wen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

The Agony of Choice: How Plants Balance Growth and Survival under Water-Limiting Conditions

(2013) H. Claeys et al.   PLANT PHYSIOLOGY

Analysis of rice Snf2 family proteins and their potential roles in epigenetic regulation

(2013) Yongfeng Hu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Analysis of transcript and metabolite levels in Italian rice (Oryza sativa L.) cultivars subjected to osmotic stress or benzothiadiazole treatment

(2013) Elena Baldoni et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A systems biology perspective on the role of WRKY transcription factors in drought responses in plants

(2013) Prateek Tripathi et al.   PLANTA

Transcriptome Profiling of Leaf Elongation Zone under Drought in Contrasting Rice Cultivars

(2013) Andrew J. Cal et al.   PLoS One

Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling

(2013) Thomas Degenkolbe et al.   PLoS One

Global transcriptome analysis of two wild relatives of peanut under drought and fungi infection

(2012) Patricia M Guimarães et al.   BMC GENOMICS

Transcriptome Analysis Using a High-Density Oligomicroarray under Drought Stress in Various Genotypes of Cassava: An Important Tropical Crop

(2012) Y. Utsumi et al.   DNA RESEARCH

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments

(2012) Shuichi Matsuda et al.   MOLECULAR GENETICS AND GENOMICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

OsNAC5overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field

(2012) Jin Seo Jeong et al.   PLANT BIOTECHNOLOGY JOURNAL

OsMYB2P-1, an R2R3 MYB Transcription Factor, Is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice

(2012) X. Dai et al.   PLANT PHYSIOLOGY

HRS1 Acts as a Negative Regulator of Abscisic Acid Signaling to Promote Timely Germination of Arabidopsis Seeds

(2012) Chongming Wu et al.   PLoS One

Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice

(2011) X. -Y. Li et al.   BIOLOGIA PLANTARUM

Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress

(2011) Ali Moumeni et al.   BMC PLANT BIOLOGY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Reduction of abscisic acid levels or inhibition of abscisic acid signaling in rice during the early phase of Magnaporthe oryzae infection decreases its susceptibility to the fungus

(2011) Katsumi Yazawa et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Achievements and Challenges in Understanding Plant Abiotic Stress Responses and Tolerance

(2011) F. Qin et al.   PLANT AND CELL PHYSIOLOGY

Rice ABI5-Like1 Regulates Abscisic Acid and Auxin Responses by Affecting the Expression of ABRE-Containing Genes

(2011) X. Yang et al.   PLANT PHYSIOLOGY

Genetic, proteomic and metabolic analysis of the regulation of energy storage in rice seedlings in response to drought

(2011) Liebo Shu et al.   PROTEOMICS

The novel functions of kinesin motor proteins in plants

(2011) Juan Li et al.   PROTOPLASMA

Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice

(2010) Tomomi Mito et al.   PLANT BIOTECHNOLOGY JOURNAL

Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

(2010) Sangram K. Lenka et al.   PLANT BIOTECHNOLOGY JOURNAL

Progress studies of drought-responsive genes in rice

(2010) Toto Hadiarto et al.   PLANT CELL REPORTS

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Gene Expression Profiles Deciphering Rice Phenotypic Variation between Nipponbare (Japonica) and 93-11 (Indica) during Oxidative Stress

(2010) Fengxia Liu et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Differential global genomic changes in rice root in response to low-, middle-, and high-osmotic stresses

(2009) Ting-chen Ma et al.   ACTA PHYSIOLOGIAE PLANTARUM

Transcript length bias in RNA-seq data confounds systems biology

(2009) Alicia Oshlack et al.   Biology Direct

Characterization of the 1-aminocyclopropane-1-carboxylic acid (ACC) oxidase multigene family of Malus domestica Borkh

(2009) Jan E. Binnie et al.   PHYTOCHEMISTRY

Epidermal Cell Death in Rice Is Confined to Cells with a Distinct Molecular Identity and Is Mediated by Ethylene and H2O2 through an Autoamplified Signal Pathway

(2009) B. Steffens et al.   PLANT CELL

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Breeding for drought tolerance: Direct selection for yield, response to selection and use of drought-tolerant donors in upland and lowland-adapted populations

(2008) Arvind Kumar et al.   FIELD CROPS RESEARCH

Adaptations of higher plant cell walls to water loss: drought vs desiccation

(2008) John P. Moore et al.   PHYSIOLOGIA PLANTARUM

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

(2008) Thomas Degenkolbe et al.   PLANT MOLECULAR BIOLOGY

Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5

(2008) Verónica Garrocho-Villegas et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses

(2008) Ann Moons   PLANTA

Ethylene—A key regulator of submergence responses in rice

(2007) Takeshi Fukao et al.   PLANT SCIENCE