Response of diatom-associated bacteria to host growth state, nutrient concentrations, and viral host infection in a model system

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Exploring bacteria–diatom associations using single-cell whole genome amplification

(2014) LJ Baker et al.   AQUATIC MICROBIAL ECOLOGY

Coculture with marine bacteria confers resistance to complete viral lysis of diatom cultures

(2014) K Kimura et al.   AQUATIC MICROBIAL ECOLOGY

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

(2013) Marilou P Sison-Mangus et al.   ISME Journal

Coastal Bacterioplankton Community Dynamics in Response to a Natural Disturbance

(2013) Sara K. Yeo et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Bacterial communities and species-specific associations with the mucus of Brazilian coral species

(2013) Camila Carlos et al.   Scientific Reports

Chemotaxis of Marinobacter adhaerens and Its Impact on Attachment to the Diatom Thalassiosira weissflogii

(2012) Eva C. Sonnenschein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Effects of Marinobacter adhaerens HP15 on polymer exudation by Thalassiosira weissflogii at different N:P ratios

(2012) A Gärdes et al.   MARINE ECOLOGY PROGRESS SERIES

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Multiple B-vitamin depletion in large areas of the coastal ocean

(2012) S. A. Sanudo-Wilhelmy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton

(2012) Erin M. Bertrand et al.   Frontiers in Microbiology

Nutrient Inputs, Phytoplankton Response, and CO2 Variations in a Semi-Enclosed Subtropical Embayment, Kaneohe Bay, Hawaii

(2011) Patrick Drupp et al.   AQUATIC GEOCHEMISTRY

Bacterial community composition differs with species and toxigenicity of the diatom Pseudo-nitzschia

(2011) ML Guannel et al.   AQUATIC MICROBIAL ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Siderophore-mediated iron uptake in two clades of Marinobacter spp. associated with phytoplankton: the role of light

(2011) Shady A. Amin et al.   BIOMETALS

Growth and release of extracellular organic compounds by benthic diatoms depend on interactions with bacteria

(2011) Christian G. Bruckner et al.   ENVIRONMENTAL MICROBIOLOGY

CO2 and vitamin B12 interactions determine bioactive trace metal requirements of a subarctic Pacific diatom

(2011) Andrew L King et al.   ISME Journal

Bacterial attachment to phytoplankton in the pelagic marine environment

(2011) JR Graff et al.   MARINE ECOLOGY PROGRESS SERIES

Interactions of the Algicidal Bacterium Kordia algicida with Diatoms: Regulated Protease Excretion for Specific Algal Lysis

(2011) Carsten Paul et al.   PLoS One

Diatom-associated bacteria are required for aggregation of Thalassiosira weissflogii

(2010) Astrid Gärdes et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Most harmful algal bloom species are vitamin B1 and B12 auxotrophs

(2010) Y. Z. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales

(2010) Brendan P. Hodkinson et al.   SYMBIOSIS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism

(2010) Astrid Gärdes et al.   Standards in Genomic Sciences

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism

(2009) S. A. Amin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA