Structural genomics and transcriptional characterization of the Dormancy-Associated MADS-box genes during bud dormancy progression in apple

Expression of DORMANCY-ASSOCIATED MADS-BOX (DAM)-like genes in apple

(2015) N. Mimida et al.   BIOLOGIA PLANTARUM

Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes

(2015) Diogo Denardi Porto et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of a peach CBF gene in apple: a model for understanding the integration of growth, dormancy, and cold hardiness in woody plants

(2015) Michael Wisniewski et al.   Frontiers in Plant Science

Overexpression of the kiwifruit SVP3 gene affects reproductive development and suppresses anthocyanin biosynthesis in petals, but has no effect on vegetative growth, dormancy, or flowering time

(2014) Rongmei Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reference genes for transcriptional analysis of flowering and fruit ripening stages in apple (Malus × domestica Borkh.)

(2014) Pâmela Perini et al.   MOLECULAR BREEDING

Bud dormancy in apple trees after thermal fluctuations

(2014) Rafael Anzanello et al.   PESQUISA AGROPECUARIA BRASILEIRA

Histone modification and signalling cascade of thedormancy-associated MADS-boxgene,PpMADS13-1, in Japanese pear (Pyrus pyrifolia) during endodormancy

(2014) TAKANORI SAITO et al.   PLANT CELL AND ENVIRONMENT

MADS Domain Transcription Factors Mediate Short-Range DNA Looping That Is Essential for Target Gene Expression in Arabidopsis

(2013) M. A. Mendes et al.   PLANT CELL

Differential Transcriptional Profiles of Dormancy-Related Genes in Apple Buds

(2013) Vítor da Silveira Falavigna et al.   PLANT MOLECULAR BIOLOGY REPORTER

Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response

(2013) K. Hill et al.   PLANT PHYSIOLOGY

Dissection of chilling requirement and bloom date QTLs in peach using a whole genome sequencing of sibling trees from an F2 mapping population

(2013) Tatyana N. Zhebentyayeva et al.   Tree Genetics & Genomes

Expression and genomic structure of the dormancy-associated MADS box genes MADS13 in Japanese pears (Pyrus pyrifolia Nakai) that differ in their chilling requirement for endodormancy release

(2013) T. Saito et al.   TREE PHYSIOLOGY

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies

(2012) Sook Jung et al.   BMC GENOMICS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Chilling-Dependent Release of Seed and Bud Dormancy in Peach Associates to Common Changes in Gene Expression

(2012) Carmen Leida et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family

(2011) Eudald Illa et al.   BMC EVOLUTIONARY BIOLOGY

Conservation and divergence of four kiwifruit SVP-like MADS-box genes suggest distinct roles in kiwifruit bud dormancy and flowering

(2011) Rong-Mei Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional and Expressional Analyses of PmDAM Genes Associated with Endodormancy in Japanese Apricot

(2011) Ryuta Sasaki et al.   PLANT PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate

(2010) S. Jiménez et al.   PLANT MOLECULAR BIOLOGY

Characterization, expression and function of DORMANCY ASSOCIATED MADS-BOX genes from leafy spurge

(2010) David P. Horvath et al.   PLANT MOLECULAR BIOLOGY

MADS: the missing link between identity and growth?

(2010) Marcelo C. Dornelas et al.   TRENDS IN PLANT SCIENCE

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Dormancy-associated MADS genes from the EVG locus of peach [Prunus persica (L.) Batsch] have distinct seasonal and photoperiodic expression patterns

(2009) Z. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation

(2008) Douglas Gary Bielenberg et al.   Tree Genetics & Genomes