How should we measure proportionality on relative gene expression data?

Proportionality: A Valid Alternative to Correlation for Relative Data

(2015) David Lovell et al.   PLoS Computational Biology

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Revisiting Global Gene Expression Analysis

(2012) Jakob Lovén et al.   CELL

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

(2012) Samuel Marguerat et al.   CELL

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Robust estimation and inference for bivariate line-fitting in allometry

(2011) Sara Taskinen et al.   BIOMETRICAL JOURNAL

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Correlation Analysis for Compositional Data

(2009) Peter Filzmoser et al.   Mathematical Geosciences