Article
Plant Sciences
Rithesh B. Natarajan, Pooja Pathania, Hardeep Singh, Anuradha Agrawal, Rajkumar Subramani
Summary: Genome size variation is an important attribute in evolutionary and species characterization. This study provides reliable information on the genome size and ploidy level of wild Musa species, which could be used in taxonomic and crop improvement programs.
Article
Oncology
Koya Yoshizawa, Akira Matsura, Masaya Shimada, Sumire Ishida-Ishihara, Fuyu Sato, Takahiro Yamamoto, Kan Yaguchi, Eiji Kawamoto, Taruho Kuroda, Kazuya Matsuo, Nobuyuki Tamaoki, Ryuichi Sakai, Yasuhito Shimada, Mithilesh Mishra, Ryota Uehara
Summary: Tetraploid cells are more susceptible to CENP-E inhibitors and the inhibitors can selectively suppress the growth of tetraploid cells.
MOLECULAR ONCOLOGY
(2023)
Article
Horticulture
Yan He, Lulu Yang, Yanjun Zhang, Qiong Liang
Summary: This study provides a comprehensive cytological analysis of the Bletilla, a genus of orchids with high medical value. The study obtained detailed estimates of ploidy level, karyotype, and genome size and found moderate cytological variation in Bletilla. The study also observed differences in karyotype symmetry and genome size among different species.
Article
Plant Sciences
Zhuang Meng, Qinnan Wang, Haris Khurshid, Ghulam Raza, Jinlei Han, Baohua Wang, Kai Wang
Summary: The genus Saccharum presents challenges in uncovering its genomic structure and evolution due to its high polyploidy and highly varied chromosome numbers. The study revealed uneven ploidy in some Saccharum spontaneum clones, suggesting hybridization events. Using chromosome painting FISH, unexpected interspecific recombination levels were found in sugarcane cultivars, indicating frequent chromosome exchange.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Agronomy
Cobes Gatarira, Lucia Sladekova, Alzbeta Nemeckova, Denisa Simonikova, Rajneesh Paliwal, Asrat Asfaw, Michael Abberton, Gueye Badara, Robert Asiedu, Jana Cizkova, Eva Hribova, Jaroslav Dolezel, David DeKoeyer, Victor Adetimirin, Ranjana Bhattacharjee
Summary: Yam is a herbaceous vine plant cultivated in the tropics and subtropics, with 11 cultivated species supporting over 300 million people. The study investigated the ploidy levels of 236 accessions, finding that most cultivars were diploid, triploid, or tetraploid, with wild species being diploid. Matching results were obtained from chromosome counting and genotyping-based methods, suggesting potential for successful breeding programs.
Article
Horticulture
S. Brooks Parrish, Renjuan Qian, Zhanao Deng
Summary: This study aimed to obtain information on somatic chromosome numbers, karyotypes, and genome size of five Lantana species. Significant differences were found in nuclear DNA content, chromosome number, and karyotype among the native and introduced species, which will aid in identifying, preserving, and utilizing native Lantana species. These results will be useful for assessing ploidy levels in the genus through flow cytometry.
Article
Biology
Jin-Long Yang, Dan-Dan Feng, Jie Liu, Jia-Kang Xu, Ke Chen, Yi-Feng Li, You-Ting Zhu, Xiao Liang, Ying Lu
Summary: The study constructed a chromosome-level genome of the hard-shelled mussel using advanced sequencing technologies, revealing high genome completeness and facilitating gene annotation. Phylogenetic analysis showed the evolutionary relationship of M. coruscus with other bivalves, and transcriptomic profiling identified signaling pathways involved in metamorphosis.
Article
Biochemistry & Molecular Biology
Behnaz Tohidi, Mehdi Rahimmalek, Ahmad Arzani
Summary: This study evaluated the inter and intra species variation of Thymus species in Iran through cytological observations and field experiments. The results showed different chemical compositions among populations, providing valuable information for selecting parents in breeding programs to improve bioactive components.
CHEMISTRY & BIODIVERSITY
(2021)
Article
Biochemical Research Methods
Feng Liu, Jiashu Li, Tongzhou Zhang, Jun Chen, Chun Loong Ho
Summary: DNA data storage technology provides long-term stability, high density, and sustainable storage. The development of a Bacillus chassis integrated with an inducible artificially assembled bacterial chromosome enables random data access and demonstrates the stability of data storage through viability assays of spores.
ACS SYNTHETIC BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Shoujian Li, Guoliang Meng, Caihong Dong
Summary: Sclerotia of Wolfiporia hoelen are one of the most important traditional Chinese medicines. In this study, the first high-quality homokaryotic genome of W. hoelen was presented, providing crucial information for genome structure and stability, high-temperature adaption, and sexual and asexual process.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Plant Sciences
Seong Beom Jin, Min Ju Kim, Cheol Woo Choi, Suk Man Park, Su Hyun Yun
Summary: This study genetically verified that sour orange plants derived from anther culture were developed from somatic embryos or haploid tissues. The anther culture technique can be used to obtain homozygous diploid and aneuploid citrus plants.
Article
Plant Sciences
Marion Orsucci, Xuyue Yang, Theofilos Vanikiotis, Maria Guerrina, Tianlin Duan, Martin Lascoux, Sylvain Glemin
Summary: Self-fertilization reduces fitness and competitive ability in plant species, while the effect of polyploidy is unclear.
Article
Plant Sciences
Yi Wang, Limin Lu, Jingrui Li, Huayang Li, Yichen You, Shuying Zang, Yongqing Zhang, Jianfei Ye, Zemin Lv, Zhaoyu Zhang, Yongsheng Qin, Hongling Zhang, Fei Xia, Hui Li, Huijin Zhang, Peige Fan, Lei Shi, Zhenchang Liang, Hongxia Cui
Summary: Lilacs (Syringa L.) are a well-known group of ornamental and aromatic woody plants that have been extensively used for gardening, essential oils, and medicine in East Asia and Europe. This study presents the chromosome-level genome of Syringa oblata, revealing its evolutionary analysis, transcriptomics, and metabolic profiling. The results provide insights into the origin and diversity of lilacs.
Article
Evolutionary Biology
Haimeng Li, Minhui Shi, Qing Wang, Tian Xia, Sunil Kumar Sahu, Yu Zhang, Jiangang Wang, Tianfeng Li, Yue Ma, Tianlu Liu, Huan Liu, Tianming Lan, Suying Bai
Summary: This article reports the first high-quality chromosome-level genome assembly of the muskrat using single-tube long fragment read, BGISEQ, and Hi-C sequencing technologies. The assembly has high completeness and contiguity, making it a valuable resource for improving our understanding of muskrat ecology and musk secretion.
GENOME BIOLOGY AND EVOLUTION
(2022)
Article
Biochemistry & Molecular Biology
Weihua Ma, Le Xu, Hongxia Hua, Mengyao Chen, Mengjian Guo, Kang He, Jing Zhao, Fei Li
Summary: The genomes of three major rice insect pests, namely Nilaparvata lugens, Sogatella furcifera, and Laodelphax striatellus, were improved and scaffolded at the chromosome level in this study, providing valuable resources for future molecular ecology research and pest control strategies.
MOLECULAR ECOLOGY RESOURCES
(2021)
Article
Biodiversity Conservation
Dirk Nikolaus Karger, Hanna Tuomisto, Victor B. Amoroso, Dedy Darnaedi, Arief Hidayat, Stefan Abrahamczyk, Juergen Kluge, Marcus Lehnert, Michael Kessler
Article
Ecology
Ran Wei, Qiaoping Xiang, Harald Schneider, Michael A. Sundue, Michael Kessler, Peris W. Kamau, Arief Hidayat, Xianchun Zhang
JOURNAL OF BIOGEOGRAPHY
(2015)
Editorial Material
Plant Sciences
Marcus Lehnert, Fulgent P. Coritico, Dedy Darnaedi, Arief Hidayat, Juergen Kluge, Dirk Nikolaus Karger, Michael Kessler
Editorial Material
Plant Sciences
Hirokazu Tsukaya, Arief Hidayat
Article
Plant Sciences
C. -W. Chen, L. T. Ngan, A. Hidayat, L. Evangelista, H. P. Nooteboom, W. -L. Chiou
Article
Ecology
Dirk Nikolaus Karger, Patrick Weigelt, Victor B. Amoroso, Dedy Darnaedi, Arief Hidayat, Holger Kreft, Michael Kessler
JOURNAL OF BIOGEOGRAPHY
(2014)
Article
Plant Sciences
Marcus Lehnert, Fulgent P. Coritico, Dedy Darnaedi, Arief Hidayat, Juergen Kluge, Dirk Nikolaus Karger, Michael Kessler
Article
Biochemistry & Molecular Biology
Yun-Xia Li, Zhang-Hai Li, Andre Schuiteman, Mark W. Chase, Jian-Wu Li, Wei-Chang Huang, Arief Hidayat, Sha-Sha Wu, Xiao-Hua Jin
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2019)
Article
Plant Sciences
Dongliang Lin, Kailing Zhou, Arief Hidayat, Xiao-Hua Jin
Article
Plant Sciences
Kenji Suetsugu, Arief Hidayat, Hirokazu Tsukaya
ACTA PHYTOTAXONOMICA ET GEOBOTANICA
(2018)